Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K16
         (246 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC122564-1|AAI22565.1|  632|Homo sapiens TBC1 domain family, mem...    28   4.8  
AL591849-3|CAI40161.1| 1178|Homo sapiens novel protein protein.        28   4.8  
AL391315-4|CAI39548.1| 1178|Homo sapiens novel protein protein.        28   4.8  
AK123957-1|BAC85735.1|  632|Homo sapiens protein ( Homo sapiens ...    28   4.8  

>BC122564-1|AAI22565.1|  632|Homo sapiens TBC1 domain family, member
           8B (with GRAM domain) protein.
          Length = 632

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = +3

Query: 36  NHYLSTFISLSDPYLL---LAHYSIHKL 110
           NHY S F+ ++  YLL   LA+Y+I +L
Sbjct: 228 NHYFSMFLHINQTYLLMEQLANYAIRRL 255


>AL591849-3|CAI40161.1| 1178|Homo sapiens novel protein protein.
          Length = 1178

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = +3

Query: 36  NHYLSTFISLSDPYLL---LAHYSIHKL 110
           NHY S F+ ++  YLL   LA+Y+I +L
Sbjct: 286 NHYFSMFLHINQTYLLMEQLANYAIRRL 313


>AL391315-4|CAI39548.1| 1178|Homo sapiens novel protein protein.
          Length = 1178

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = +3

Query: 36  NHYLSTFISLSDPYLL---LAHYSIHKL 110
           NHY S F+ ++  YLL   LA+Y+I +L
Sbjct: 286 NHYFSMFLHINQTYLLMEQLANYAIRRL 313


>AK123957-1|BAC85735.1|  632|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41963 fis, clone PUAEN2006328, moderately
           similar to Homo sapiens TBC1 domain family, member 8
           (with GRAM ).
          Length = 632

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = +3

Query: 36  NHYLSTFISLSDPYLL---LAHYSIHKL 110
           NHY S F+ ++  YLL   LA+Y+I +L
Sbjct: 228 NHYFSMFLHINQTYLLMEQLANYAIRRL 255


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,732,150
Number of Sequences: 237096
Number of extensions: 569792
Number of successful extensions: 660
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 76,859,062
effective HSP length: 59
effective length of database: 62,870,398
effective search space used: 1383148756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)