Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_K16
(246 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 27 2.3
Z81061-1|CAB02934.3| 436|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z68221-3|CAA92495.1| 1249|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z68221-2|CAD59229.1| 1228|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z68221-1|CAB61039.2| 1252|Caenorhabditis elegans Hypothetical pr... 25 7.1
AY438645-1|AAR00672.1| 1249|Caenorhabditis elegans membrane Calc... 25 7.1
AY438644-1|AAR00671.1| 1252|Caenorhabditis elegans membrane Calc... 25 7.1
AJ223616-1|CAA11491.1| 1228|Caenorhabditis elegans calcium ATPas... 25 7.1
AF127558-1|AAD21088.1| 419|Caenorhabditis elegans isovaleryl-Co... 25 9.4
AF038605-3|AAB92016.1| 419|Caenorhabditis elegans Hypothetical ... 25 9.4
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 245 LIVELVLCATMLVRIALWF 189
+I+EL+ CA LV + WF
Sbjct: 378 IILELMTCANFLVMVGFWF 396
>Z81061-1|CAB02934.3| 436|Caenorhabditis elegans Hypothetical
protein F14H8.1 protein.
Length = 436
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 170 NQNYKRTKDQFHFLELHLSIQFMY 99
NQ K DQFHF LS+ MY
Sbjct: 313 NQIPKLFDDQFHFTNFTLSLNEMY 336
>Z68221-3|CAA92495.1| 1249|Caenorhabditis elegans Hypothetical
protein W09C2.3c protein.
Length = 1249
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = -2
Query: 245 LIVELVLCATMLVRIALWFITNNN*NQNYKRTKDQFHFLELHLSIQF 105
L ++++ C T + IAL + +Y K++F +++ + ++F
Sbjct: 374 LALQIIYCGTTIAIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKF 420
>Z68221-2|CAD59229.1| 1228|Caenorhabditis elegans Hypothetical
protein W09C2.3b protein.
Length = 1228
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = -2
Query: 245 LIVELVLCATMLVRIALWFITNNN*NQNYKRTKDQFHFLELHLSIQF 105
L ++++ C T + IAL + +Y K++F +++ + ++F
Sbjct: 353 LALQIIYCGTTIAIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKF 399
>Z68221-1|CAB61039.2| 1252|Caenorhabditis elegans Hypothetical
protein W09C2.3a protein.
Length = 1252
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = -2
Query: 245 LIVELVLCATMLVRIALWFITNNN*NQNYKRTKDQFHFLELHLSIQF 105
L ++++ C T + IAL + +Y K++F +++ + ++F
Sbjct: 377 LALQIIYCGTTIAIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKF 423
>AY438645-1|AAR00672.1| 1249|Caenorhabditis elegans membrane Calcium
ATPase (136.9kD) (mca-1) protein.
Length = 1249
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = -2
Query: 245 LIVELVLCATMLVRIALWFITNNN*NQNYKRTKDQFHFLELHLSIQF 105
L ++++ C T + IAL + +Y K++F +++ + ++F
Sbjct: 374 LALQIIYCGTTIAIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKF 420
>AY438644-1|AAR00671.1| 1252|Caenorhabditis elegans membrane Calcium
ATPase (136.6kD) (mca-1) protein.
Length = 1252
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = -2
Query: 245 LIVELVLCATMLVRIALWFITNNN*NQNYKRTKDQFHFLELHLSIQF 105
L ++++ C T + IAL + +Y K++F +++ + ++F
Sbjct: 377 LALQIIYCGTTIAIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKF 423
>AJ223616-1|CAA11491.1| 1228|Caenorhabditis elegans calcium ATPase
protein.
Length = 1228
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = -2
Query: 245 LIVELVLCATMLVRIALWFITNNN*NQNYKRTKDQFHFLELHLSIQF 105
L ++++ C T + IAL + +Y K++F +++ + ++F
Sbjct: 353 LALQIIYCGTTIAIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKF 399
>AF127558-1|AAD21088.1| 419|Caenorhabditis elegans isovaleryl-CoA
dehydrogenase precursorprotein.
Length = 419
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 2 EPCVDVCLDKVQPLSINLHISE 67
E C VCLD +Q L N +I++
Sbjct: 361 EKCTQVCLDAIQILGGNGYIND 382
>AF038605-3|AAB92016.1| 419|Caenorhabditis elegans Hypothetical
protein C02B10.1 protein.
Length = 419
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 2 EPCVDVCLDKVQPLSINLHISE 67
E C VCLD +Q L N +I++
Sbjct: 361 EKCTQVCLDAIQILGGNGYIND 382
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,578,134
Number of Sequences: 27780
Number of extensions: 92684
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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