Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K15
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...   228   4e-61
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...   196   1e-51
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...   175   3e-45
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...   167   6e-43
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...   147   9e-37
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...   112   2e-26
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...   103   2e-23
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    86   2e-18
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    56   3e-09
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    26   2.8  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   6.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   6.4  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    25   8.4  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   8.4  

>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score =  228 bits (557), Expect = 4e-61
 Identities = 104/129 (80%), Positives = 109/129 (84%)
 Frame = +2

Query: 113 FFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGD 292
           FFDV A+G PLGRIV +L  DV PKT  NFRALCTGEKG+GY GSTFHRVIP FMLQGGD
Sbjct: 5   FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGD 64

Query: 293 FTNHNGTGGKSIYGEKFGDENFVLKHTGPGVLSMANAGPNTNGSQFFITTVKTSWLDGRH 472
           FT  NGTGGKSIYGEKF DENF LKH  PG+LSMANAGPNTNGSQFFITTV T WLDG+H
Sbjct: 65  FTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKH 124

Query: 473 VVFGNVVEG 499
           VVFG V EG
Sbjct: 125 VVFGEVTEG 133


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score =  196 bits (479), Expect = 1e-51
 Identities = 89/130 (68%), Positives = 101/130 (77%)
 Frame = +2

Query: 110 VFFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGG 289
           V+FD+      LGR+ + L     PKT ENFRAL TGEKGFGY+GS FHRVIPNFM+QGG
Sbjct: 29  VYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGG 88

Query: 290 DFTNHNGTGGKSIYGEKFGDENFVLKHTGPGVLSMANAGPNTNGSQFFITTVKTSWLDGR 469
           D T  +GTGGKSIYG +F DENF L H  PG+LSMANAGP++NGSQFFITTVKT WLDG 
Sbjct: 89  DITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGH 148

Query: 470 HVVFGNVVEG 499
           HVVFG V+ G
Sbjct: 149 HVVFGEVLSG 158


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score =  175 bits (426), Expect = 3e-45
 Identities = 86/133 (64%), Positives = 98/133 (73%), Gaps = 4/133 (3%)
 Frame = +2

Query: 113 FFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGEKGFG----YKGSTFHRVIPNFML 280
           +F ++ DG     I  EL  +V PKT +NF +LC G +  G    YKGS FHRVI NFML
Sbjct: 6   YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML 65

Query: 281 QGGDFTNHNGTGGKSIYGEKFGDENFVLKHTGPGVLSMANAGPNTNGSQFFITTVKTSWL 460
           QGGDFT  NGTGG+SIYGEKF DENF LKH  P +LSMANAGPNTNGSQFFITTV T  L
Sbjct: 66  QGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHL 125

Query: 461 DGRHVVFGNVVEG 499
           DG+HVVFG V++G
Sbjct: 126 DGKHVVFGKVIQG 138


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score =  167 bits (407), Expect = 6e-43
 Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 7/139 (5%)
 Frame = +2

Query: 104 PRVFFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGE------KGFGYKGSTFHRVI 265
           P VF D+  DG  LGRI + L + + PKT ENFR  CTGE      K  GYK STFHR+I
Sbjct: 5   PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64

Query: 266 PNFMLQGGDFTNHNGTGGKSIYGEK-FGDENFVLKHTGPGVLSMANAGPNTNGSQFFITT 442
             FM+QGGDF + +GTG  +I+  + F DENF LKH  PG+LSMANAG ++NG QFFITT
Sbjct: 65  QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124

Query: 443 VKTSWLDGRHVVFGNVVEG 499
           V   +LDG+HVVFG V+EG
Sbjct: 125 VPCDFLDGKHVVFGEVIEG 143


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score =  147 bits (356), Expect = 9e-37
 Identities = 72/120 (60%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
 Frame = +2

Query: 143 LGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGDFTNHNGTGGK 322
           LG+I++EL T+  PKTC+NF  L   ++G+ Y G  FHRVIP+F++QGGD T   G GG 
Sbjct: 10  LGKILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFVIQGGDPTG-TGRGGT 65

Query: 323 SIYGEKFGDE-NFVLKHTGPGVLSMANAGPNTNGSQFFITTVKTSWLDGRHVVFGNVVEG 499
           SIYG+KF DE +  L HTG G+LSMANAGPNTN SQFFIT   T WLDG+H +FG VV G
Sbjct: 66  SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSG 125


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score =  112 bits (270), Expect = 2e-26
 Identities = 59/119 (49%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
 Frame = +2

Query: 146 GRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGDFTNHNGTGGKS 325
           G I ++L  +  PK  +NF      E G+ Y  + FHR+I NFM+QGGD    +GTGG+S
Sbjct: 464 GDISIKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGGDPLG-DGTGGES 519

Query: 326 IYGEKFGDE-NFVLKHTGPGVLSMANAGPNTNGSQFFITTVKTSWLDGRHVVFGNVVEG 499
           I+ + F DE +  LKH  P  +SMAN+GPNTNGSQFFITT  T WLDG+H +F     G
Sbjct: 520 IWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAG 578


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score =  103 bits (246), Expect = 2e-23
 Identities = 57/119 (47%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
 Frame = +2

Query: 146 GRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGDFTNHNGTGGKS 325
           G I +EL TD  P    NF  L   ++G+ Y+ + FHR I  FM+QGGD  +  G GG+S
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGGD-PSGTGRGGQS 340

Query: 326 IYGEKFGDENF-VLKHTGPGVLSMANAGPNTNGSQFFITTVKTSWLDGRHVVFGNVVEG 499
           I+G+ F DE    LKH   G++SMAN G NTNGSQFFI       LD +H +FG VV G
Sbjct: 341 IWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGG 399


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 86.2 bits (204), Expect = 2e-18
 Identities = 51/117 (43%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
 Frame = +2

Query: 146 GRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGDFTNHNGTGGKS 325
           G I +EL     PK C NF  LC   +G+ Y G+  HRV+P F++QGGD T   G GG+S
Sbjct: 22  GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTG-TGMGGES 77

Query: 326 IYGEKFGDENFV-LKHTGPGVLSMANAGPNTNGSQFFITTVKTSWLDGRHVVFGNVV 493
           IYGE F  E    L+    G++ MA      N SQFFIT   T   +G+  +FG VV
Sbjct: 78  IYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 15/134 (11%)
 Frame = +2

Query: 143 LGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGDFTNHNGTGGK 322
           +G +V++L     PKTCENF  LC   K   Y    F+ +  N+  Q GD     G GG+
Sbjct: 9   VGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGDGGR 65

Query: 323 SIY-----GEKF--GDENFVLKHTGPGVLSMANAGPNTN-------GSQFFIT-TVKTSW 457
            ++     G +F   + N  L H   G++SM+ A  ++        GSQF IT +     
Sbjct: 66  CVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDNLEG 125

Query: 458 LDGRHVVFGNVVEG 499
           LD R+ ++G V EG
Sbjct: 126 LDERYPIYGQVAEG 139


>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = -2

Query: 436 NEELRTIGVRTRISHREHSRSSMLQDEVLIAELLAVDGLSTGTIVVCKVTTLQHEVGDDT 257
           N+  +  G+ T I  +   RS  +     I  L+  +GL+   +   KVTT Q+   +  
Sbjct: 14  NQTNQLKGLFTIIRDKTKPRSEFIFYANRIIRLIVEEGLNHLPVSSAKVTTAQNAEYEGV 73

Query: 256 VESGAFVAEALLASTESSEVFTGLR 182
           +  G     +++ + ES E   GLR
Sbjct: 74  MFDGRICGVSIMRAGESME--QGLR 96


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 331 VDGLSTGTIVVCKVTTLQHEVGDDTVESGAF-VAEALLASTESSEV 197
           V+ +    IVV KVT   HE   D+V +    V+  L   T SS+V
Sbjct: 620 VEMVERNGIVVPKVTVTSHEDDVDSVHNTPMSVSSTLSVKTSSSKV 665


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
 Frame = -3

Query: 315 PVPLWFVKSPPCS------MKLGMTRWKVEPL*PKPFSPVQRARKFSQVLGVTSVLSSTT 154
           PV LW    P CS      M+LG +   +E L P+ ++P       + V+ +   ++  T
Sbjct: 616 PVVLWLNGGPGCSSLTGLFMELGPSSINIETLKPE-YNP-HSWNSNASVIFLDQPIN--T 671

Query: 153 ILPNGDPSAVTSKKTRGKDILVY 85
              NGD S V    T GKD+  +
Sbjct: 672 GFSNGDDS-VLDTVTAGKDVYAF 693


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 453 EVLTVVMKNCEPLVLGPALAIESTPGPVCFRTKF 352
           EVL  ++     L++G  L  + T GPV  +T+F
Sbjct: 320 EVLGGLVSEANKLIIGNGLDPQVTLGPVVSKTQF 353


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 200 FRALCTGEKGFGYKGSTFHRVIP 268
           F A+C  EKG  Y    FH  +P
Sbjct: 419 FDAICLLEKGITYSQHNFHLKLP 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,426
Number of Sequences: 5004
Number of extensions: 44950
Number of successful extensions: 149
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)