Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K13
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   2.1  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   3.7  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    25   3.7  

>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 256 HVKVFKVLIVEAAVAQLVVGPDSASMDFNTTFWTPKRGCF 375
           H+ +F VL + + V   ++ P  A  D    FW PK  CF
Sbjct: 64  HIALFSVLFIRSIVQ--MIHPCLALSD--PFFWAPKHRCF 99


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 357 SPESSIEVHRRGIRPHYQLRHRRF 286
           +P++ IEV R+ I P ++  H RF
Sbjct: 7   TPKTPIEVRRKRIVPLFRANHTRF 30


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 5   AGIRHEDQPQEEHREEQAMREVIAIAHR-EFVITKV 109
           A  R E   +EE R ++ MR++I   H  E +IT++
Sbjct: 102 AEARREKTKEEEERIDELMRDIIHTDHSIEVIITEM 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,078
Number of Sequences: 5004
Number of extensions: 31923
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)