Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_K13
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1565 - 27760407-27760463,27760905-27761513 31 0.39
11_06_0750 + 26917239-26918071,26918319-26920773 29 1.6
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 28 2.7
11_06_0697 + 26371193-26371397,26371562-26374254 28 3.6
12_01_0381 - 2979069-2979707 27 4.8
03_06_0036 + 31208993-31209391,31209616-31209693,31209881-312099... 27 4.8
11_01_0358 - 2721468-2722100 27 6.3
08_01_0272 + 2200061-2200078,2200835-2202076,2202201-2202698,220... 27 6.3
11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610 27 8.3
06_03_1004 - 26832638-26833183,26833373-26833569,26833636-268338... 27 8.3
05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557... 27 8.3
>07_03_1565 - 27760407-27760463,27760905-27761513
Length = 221
Score = 31.1 bits (67), Expect = 0.39
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = -1
Query: 241 CGDCNDNFMSKLQF--MSYGDD 182
CGDCN+N + LQF M YG+D
Sbjct: 195 CGDCNENGLMTLQFKTMRYGND 216
>11_06_0750 + 26917239-26918071,26918319-26920773
Length = 1095
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/55 (21%), Positives = 23/55 (41%)
Frame = -3
Query: 416 NRYQYDRSVTGAFPKHPRFGVQKVVLKSIDAESGPTTNCATAASTISTLNTFTCF 252
N+ R + + HPR G+ + + +G C T+ +S + + T F
Sbjct: 569 NKSLTQRFIATSSHDHPRLGINTTNARHLSVHAGELRECVTSDEELSRVRSLTIF 623
>03_02_0168 +
6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 413 RYQYDRSVTGAFPKHPRFGVQKVVLKSIDAESGPTTNCATAASTIST 273
R Q D + P H RF V V+L ++A + T+A+ +ST
Sbjct: 99 RLQIDEDYSSNTPPHRRFQVPDVLLPDVEARTLHLPQPKTSAAGVST 145
>11_06_0697 + 26371193-26371397,26371562-26374254
Length = 965
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 220 SCHYSLHTPVKKHVKVFKVLIVEAAVAQLVVGPDSA 327
+C + +H P + K L +E A A ++GP+ A
Sbjct: 740 NCKFCMHLPPVGQLPNLKYLKIEGAAAVTIIGPEFA 775
>12_01_0381 - 2979069-2979707
Length = 212
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 377 PKHPRFGVQKVVLKSIDAESGPTTNCATAASTI 279
P HPRF +Q L+ +D + +T ++TI
Sbjct: 44 PTHPRFYLQDATLRQLDLSNSSSTAGGVLSTTI 76
>03_06_0036 +
31208993-31209391,31209616-31209693,31209881-31209946,
31211556-31211621,31211815-31211865,31212635-31212928
Length = 317
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 362 FGVQKVVLKSIDAESGPTTNCATAASTISTLNTFT 258
+G +V+ + +S PTT C+++ S++S+ T T
Sbjct: 88 YGGDQVIPAVVPQKSSPTTECSSSVSSMSSSPTAT 122
>11_01_0358 - 2721468-2722100
Length = 210
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 377 PKHPRFGVQKVVLKSIDAESGPTTNCATAASTIS 276
P HPRF +Q L+ +D + T+ + A ++
Sbjct: 44 PTHPRFFLQDATLRQLDLSNSSTSGVLSTALQVT 77
>08_01_0272 +
2200061-2200078,2200835-2202076,2202201-2202698,
2203316-2203345
Length = 595
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 147 ILIIYAFMLKVSKTFVITNSLWAIAMTS 64
IL+ AF+L++ F++ +S WA M +
Sbjct: 306 ILLSGAFILEILSVFIVVSSFWAYFMAT 333
>11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610
Length = 913
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/55 (20%), Positives = 23/55 (41%)
Frame = -3
Query: 416 NRYQYDRSVTGAFPKHPRFGVQKVVLKSIDAESGPTTNCATAASTISTLNTFTCF 252
N+ R + + HPR G+ + + ++ T C + +S + + T F
Sbjct: 509 NKSLAQRFIGTSLHDHPRVGINTSNARHLSVDAAKQTECVASDEELSRVRSLTIF 563
>06_03_1004 -
26832638-26833183,26833373-26833569,26833636-26833861,
26833943-26834072,26835884-26836188
Length = 467
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 38 EHREEQAMREVIAIAHREFVITKVFETF-NIKA*IIKI-EAYRHRDDRYK 181
EH+ E + R IAI HR +I K F KA + ++ E+ ++ DR K
Sbjct: 239 EHKPEGSNRSQIAIQHRWALIQKAINKFCGHKAAVDRLNESGKNEQDRAK 288
>05_02_0012 -
5575574-5575849,5575889-5575954,5576103-5576926,
5577333-5577405,5577936-5577983
Length = 428
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 259 VKVFKVLIVEAAVAQLVVGPDSASMDFNTTFWTPKRGCFGNAPVTLRSY 405
V + +V V A A G + + D T WTP C+G+ SY
Sbjct: 226 VSLTRVFPVGGAAAADKQGLPARAFDTGTPEWTPNVQCYGSGEYARISY 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,542,177
Number of Sequences: 37544
Number of extensions: 192029
Number of successful extensions: 608
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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