Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K13
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28737-9|AAA68276.1|  345|Caenorhabditis elegans Hypothetical pr...    30   0.60 
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AL032637-21|CAA21618.2|  612|Caenorhabditis elegans Hypothetical...    28   3.2  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    27   4.3  
AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin reu...    27   5.6  
AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine re...    27   5.6  
Z37140-5|CAA85499.1|  312|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z37140-4|CAA85498.1|  308|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL110479-15|CAB54361.2|  400|Caenorhabditis elegans Hypothetical...    27   7.4  
Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine rece...    26   9.8  

>U28737-9|AAA68276.1|  345|Caenorhabditis elegans Hypothetical
           protein F14B8.6 protein.
          Length = 345

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 390 NWRVPKTSPFRSPESSIEVHRRGIRPHYQLRHRRFDN 280
           +W VPKT     P+++ E++   I PH+Q R R  DN
Sbjct: 267 DWIVPKT-----PKANHELYDADITPHHQYRRRHQDN 298


>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
           protein C28A5.2 protein.
          Length = 1218

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 280 IVEAAVAQLVVGPDSASMDFNTTFWTPKRGC 372
           I E+ V  ++ G   A  D    FWTPK GC
Sbjct: 192 IAESMVYGVLEGVVIAENDHGALFWTPKMGC 222


>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
           protein C28A5.1 protein.
          Length = 1223

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 280 IVEAAVAQLVVGPDSASMDFNTTFWTPKRGC 372
           I E+ V  ++ G   A  D    FWTPK GC
Sbjct: 192 IAESMVYGVLEGVVIAENDHGALFWTPKMGC 222


>AL032637-21|CAA21618.2|  612|Caenorhabditis elegans Hypothetical
           protein Y43F8C.3 protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 187 DDLVSVITMPISLYFDNLCLYV 122
           DD  +++  PI  YFD+LC Y+
Sbjct: 370 DDEYTIVGTPIFAYFDHLCQYL 391


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 301 QLVVGPDSASMDFNTTFWTPKRGCF 375
           Q  +GPD   +++N T W  +  CF
Sbjct: 401 QSKIGPDEKRLNYNETHWHAEERCF 425


>AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin
           reuptake transporter protein.
          Length = 671

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 380 FPKHPRFGVQKVVLKSIDAESGPTTNCATAASTISTLNTFTCFFTG 243
           F   P FGV    L ++ + +    NC   A TIS +N  T FF+G
Sbjct: 360 FSLGPGFGV----LLALSSYNDFNNNCYRDAVTISIINCATSFFSG 401


>AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein87 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 241 CGDCNDNFMSKLQFMSYGDDLVSVITMPISLYFDNLCLYVKSFEDFRDYEFSM 83
           C  C D F+   Q  SY    ++  ++P+ L F   C+  KS ++   Y   +
Sbjct: 15  CPRC-DTFLCSWQDFSYTSHFLTAFSLPVYL-FGGYCILYKSPKEMSTYRIPL 65


>Z37140-5|CAA85499.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK899.6 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 259 HVFSLECGDCNDNFMSKLQFMSYGDD 182
           ++  L+C DC+  F S++ F+ + D+
Sbjct: 29  NIHKLQCSDCSSKFDSEIPFIQHIDE 54


>Z37140-4|CAA85498.1|  308|Caenorhabditis elegans Hypothetical
           protein ZK899.5 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 259 HVFSLECGDCNDNFMSKLQFMSYGDD 182
           ++  L+C DC+  F S++ F+ + D+
Sbjct: 29  NIHKLQCSDCSSKFDSEIPFIQHIDE 54


>AL110479-15|CAB54361.2|  400|Caenorhabditis elegans Hypothetical
           protein Y105C5B.16 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 181 LVSVITMPISLYFDNLCLYVKSFEDFRDYE 92
           + S I MPI  +F +  LYV  ++DF D +
Sbjct: 5   IFSAIFMPIDSFFFDPELYVPKYKDFLDVQ 34


>Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical
           protein F44F1.3 protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 172 VITMPISLYFDNLCLYVKSFEDFRDYEFSM 83
           V+ +P++  F+NL  Y K+  +FR+ ++ M
Sbjct: 233 VLLIPVAKMFNNLRKYWKTLMEFRNNQYPM 262


>U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein244 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -1

Query: 250 SLECGDCNDNFMSKLQFMSYGDDLVSVITMPISLYFDNLCLYVKSFEDFRDYEF 89
           SL C D + ++++   F++    +++ I +P+S  F   C+  K+    +  +F
Sbjct: 4   SLICSDFDSSYLASPDFVALSCHIITAIEIPLST-FGMYCILYKTPVKMKPVQF 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,252,413
Number of Sequences: 27780
Number of extensions: 175432
Number of successful extensions: 586
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)