Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_K10
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 39 4e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.29
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.39
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 28 0.90
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.2
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 2.1
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 2.7
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 4.8
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 6.3
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 6.3
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 8.4
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 8.4
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.1 bits (87), Expect = 4e-04
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 11 EMNGRIVGTKPLYVALAQRKEDRKAHL 91
EMN R++ KPLYVALAQRKE R++ L
Sbjct: 423 EMNQRMLAGKPLYVALAQRKEVRRSQL 449
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.29
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 14 MNGRIVGTKPLYVALAQRKEDRKAHLT 94
+NG + G K L+V A+++EDRK L+
Sbjct: 482 LNGVLFGKKRLFVNYAEKREDRKKRLS 508
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.1 bits (62), Expect = 0.39
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 14 MNGRIVGTKPLYVALAQRKEDR 79
+NG +VG K ++V A+RK DR
Sbjct: 445 LNGMMVGKKRIFVCFAERKSDR 466
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 0.90
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 197 QEVWWEQSILLHYLVGISDPFVAYAYLPCVACTVKSNGLC 78
+E+W+E L H LVG C CT+ S GLC
Sbjct: 192 KELWFE---LNHTLVGFGQTICLPRGRRCDMCTLSSKGLC 228
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 283 SNTCIGLRKYATTLPSSTKS-SNTGCITYFSRSKTNHRTT 399
S+T GL ++T+PSST+S SN+ + S SK + +T
Sbjct: 987 SSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSST 1026
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.6 bits (56), Expect = 2.1
Identities = 18/71 (25%), Positives = 25/71 (35%)
Frame = +1
Query: 214 SSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHR 393
S+TN N YT P T +G +PS S G S + N+
Sbjct: 61 STTNPLNLLYTQTQQPARSTTPFLLNPVGSSPGKLPVPSRNNSYLQGTAESNSGNFANNS 120
Query: 394 TTRCCWHGWIN 426
+ CW+ N
Sbjct: 121 ISNNCWNSAYN 131
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 202 TLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCIT 363
T + +++NA N+T+ +T T +N+ T LP+S+KS T T
Sbjct: 222 TCIVNASNATNSTFWLNGTNSTNGTNSTNSTSTTSHSLTKLPTSSKSLTTSKTT 275
Score = 25.4 bits (53), Expect = 4.8
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = +1
Query: 181 SHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCI 360
S +S ++ L SST +++++ TP +T + S++ + + SS+KSS+
Sbjct: 119 SSSSSSSSSLVSSTTSSSSSATP----STTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSS 174
Query: 361 TYFSRSKTNHRTT 399
S T+H+++
Sbjct: 175 RTTSHRTTSHKSS 187
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 2.7
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 190 TSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNT 351
TS + SST +T T +C T+ +++T I T P+ST SS+T
Sbjct: 569 TSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPI-------TSPNSTSSSST 615
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 190 TSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCIT 363
TS T++ +STN +TT+T T+ T S+T +A+ S + T T
Sbjct: 634 TSSTSIPLTSTNRTSTTFT---SSTSISTSSSSTATSSTSFASESSSFYSNVTTSSST 688
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 4.8
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 282 LKHLHRLTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHLLL 443
LK L RL++ICN +L E ++ L L + Q+N +L + Q + LL
Sbjct: 488 LKILTRLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALL 541
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 6.3
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 261 NHL*DQALKHLHRLTQICNHP-TVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHL 437
+ L D A + + +C+ TVL Q R+ +L+ + ++ L+ ++ HL
Sbjct: 115 SRLCDGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHL 174
Query: 438 LLLKAAVQLVINTLQICEIL 497
L L V VI T E++
Sbjct: 175 LRLVEQVNAVIGTFYTGELM 194
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 276 QALKHLHRLTQICNHPTVLH 335
Q LK + L +ICNHP +L+
Sbjct: 557 QPLKAIGLLKKICNHPDLLN 576
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 8.4
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +3
Query: 276 QALKHLHRLTQICNHPTVLHQE-LQHRLHYVLL*EQDQSQDNKVLLARL---DQSVHLLL 443
Q L + L +ICNHP ++ +E L H+ Y + ++S KV+ A L + H L
Sbjct: 587 QMLYGIDILRKICNHPDLVTREYLLHKEDY-NYGDPEKSGKLKVIRALLTLWKKQGHRTL 645
Query: 444 LKAAVQLVINTLQI 485
L + + +++ L+I
Sbjct: 646 LFSQTRQMLDILEI 659
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 176 SILLHYLVGISDPFVAYAYLPCVACTVKSNG 84
S+L Y+V ++ VA +P V VKSNG
Sbjct: 770 SLLEDYVVYLTSKTVAPENVPAVISIVKSNG 800
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,292
Number of Sequences: 5004
Number of extensions: 44690
Number of successful extensions: 178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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