Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K09
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    28   0.74 
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    27   1.3  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    27   1.7  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   4.0  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.9  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    25   6.9  

>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 17/75 (22%), Positives = 28/75 (37%)
 Frame = -2

Query: 308 NAGSEAGRDMDLEPSTPWSCSVASLSECAATQVAPGVRTHVAVDIIVDFHDPGEVSSISH 129
           N+G E    +D  P T  +  V  L   A               +  D+ DP  + ++ H
Sbjct: 59  NSGIELANYIDKNPDTVRAKKVLELGAGAGLPSIVSAFDGAKFVVSTDYPDPALIDNLEH 118

Query: 128 NTSLFATLAFSLHNV 84
           N   +A +A  +  V
Sbjct: 119 NVKQYAEIASKISAV 133


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -2

Query: 224 AATQVAPGVRTHVAVDI---IVDFHDPGEVSSISHNTSLFATLAFSLHNVSLERSVPPPG 54
           A  ++AP V   V V +   I+ F + G       + S+F  L+F +H  +    V P G
Sbjct: 461 AKPKIAPTVGIPVPVTVGKAILSFRNVGFAYPTRPSASIFDNLSFDIHPGTNVAIVAPSG 520

Query: 53  GRDAT 39
           G  +T
Sbjct: 521 GGKST 525


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 110 TLAFSLHNVSLERSVPPPG 54
           TL+FSLHNV L   +P  G
Sbjct: 160 TLSFSLHNVVLRHDIPNTG 178


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 22/56 (39%), Positives = 25/56 (44%)
 Frame = +3

Query: 195 AHPGSDLGSGALGERGDAAAPWRRRFEVHVPAGFGASVGRDRRRF*REHVTRGSLR 362
           A P S   SGALGE+G   AP       H+ AG G   G     F RE     +LR
Sbjct: 159 ASPVSSRASGALGEKGRYIAP-------HLRAGSGRESGDS--MFKRERDDSATLR 205


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 127 TLHCSRHSLSVYTTSVWSAPC-RPLGG 50
           +L  S +S S  ++ +WS+PC   LGG
Sbjct: 338 SLSKSHNSTSALSSQIWSSPCASTLGG 364


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 145 TSPGSWKSTIMSTATWVRTPGATWVAAHSESEATLQLHGVEGSRSMSLPAS 297
           +SP S  STI S+++   +P +T     S S ++        S SMS  +S
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSS 331


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 34  VCVASRPPGGGTERSKLTLCRLKASVANNEVLCD 135
           V  ++RPP  G + S       K+S  +NEV+ +
Sbjct: 191 VQASARPPAAGQDDSAADASTTKSSPVHNEVMAE 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,241
Number of Sequences: 5004
Number of extensions: 39682
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)