Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_K09
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 34 0.061
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 33 0.19
05_05_0004 - 21422483-21422785,21423354-21423938,21424746-214248... 31 0.75
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 30 1.3
09_04_0408 + 17352110-17352619,17352709-17352834,17353036-173532... 30 1.3
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 29 1.7
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 29 3.0
06_03_1219 - 28491185-28494415 28 4.0
03_03_0164 - 14979364-14979479,14979613-14980102 28 4.0
01_06_1817 - 40091188-40092198 28 4.0
12_02_0482 + 19541017-19541139,19542687-19542765,19542971-195430... 28 5.3
06_03_0218 + 18219956-18220555 28 5.3
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 5.3
01_07_0378 - 43167805-43169152,43169258-43169326,43169473-431695... 28 5.3
01_05_0281 - 20334578-20334961,20335859-20336005,20336088-203361... 28 5.3
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 27 7.0
08_02_0051 + 11683636-11684046 27 7.0
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960... 27 7.0
04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054 27 7.0
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533... 27 7.0
01_06_0958 - 33357689-33357997,33358135-33358284,33358371-333585... 27 7.0
01_05_0648 + 23915469-23915898,23916551-23916619,23916956-239173... 27 7.0
04_04_1376 + 33058306-33059763,33059851-33059991,33060594-330606... 27 9.2
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 27 9.2
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 34.3 bits (75), Expect = 0.061
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 317 PPSILTGTRY-SRLSPPQDSGFIKPWRRIPDVCTIPYA*INCDFVYAVIRVM 469
P LT R+ + LSPP D+G WR D CT + I CD AV +++
Sbjct: 392 PEERLTLLRFLAELSPPHDNGLAASWRNRTDCCT--WEGIICDVDGAVTKIL 441
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 32.7 bits (71), Expect = 0.19
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Frame = +3
Query: 171 DNVDSDVGAHPGSDLGSGALGERGDAAAPWRRRFEVHVPAGFGASVG-RDRRRF*REHVT 347
D ++ +V A G+ G GD AP +RF HV GF S+ D + V
Sbjct: 39 DEIEIEVAAAAGASPSRQHGGLHGDVQAPTWKRFLAHVGPGFVISIAYLDPSNLQTDLVA 98
Query: 348 RGSLRRKTQAL*SRGDEFLMFVQFLTLK*TVILFMQ*YELCM 473
S R + G F++ VQ L +I ELCM
Sbjct: 99 GSSHRYSLLWVLLFGFIFVLTVQSLAANLGIITGRHLAELCM 140
>05_05_0004 -
21422483-21422785,21423354-21423938,21424746-21424849,
21425467-21425767
Length = 430
Score = 30.7 bits (66), Expect = 0.75
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 40 VASRPPGGGTERSKLT--LCRLKASVANNEVLCDIEETSPGSWKSTIMSTAT 189
VA GG R + T L + ++ ANN +C+ +PGSW + +++ T
Sbjct: 122 VAVAAAGGIVAREENTEELVQADSAGANNNKICECTFLNPGSWDAALLAAGT 173
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 136 IEETSPGSWKSTIMSTATWVRTPGATWVAAHSESEATLQL 255
+ +T G++ +++ A WV T A W E E T +L
Sbjct: 342 VSKTYKGNYSEYVLAKAIWVETQYAAWEKQQKEIEQTKEL 381
>09_04_0408 +
17352110-17352619,17352709-17352834,17353036-17353209,
17353669-17353830,17353998-17354140,17354835-17354910,
17355445-17355589,17355847-17355896,17356001-17356078,
17357153-17357314,17357406-17357669,17357929-17358033,
17358158-17358247,17358344-17358346
Length = 695
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 317 PPSILTGTRYSRLSPPQD-SGFIKPWRRIPDVCTIPYA*INCDFVYAVIRVMHV*SY 484
P +++ GTR LS S P +++PD+ +PY+ + C +++ + Y
Sbjct: 16 PWNVIPGTREDALSCVVPISAIYTPLKQVPDIPVLPYSPLRCRMCRSILNPFSIVDY 72
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 484 VTLNMHNSYHCINKITVYLSVRNCT-NIRNSSPRLY 380
+T N ++ Y ITVY+ +RNCT +R++S L+
Sbjct: 401 ITYNKYHPYTSWIPITVYICLRNCTQQLRSASLALF 436
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +1
Query: 7 RNSARGSHRVCVASRPPGGGTERSKLTLCRLKASVANNEVLCDIEETSPGSWKSTIMS 180
RNS RGS SR G+ER K C L A +N + P WK T++S
Sbjct: 798 RNS-RGSKNKISNSRKLHLGSERKKRGGCALLARGSNKDGGSSTNGFVPYEWKRTVLS 854
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 356 SPPQDSGFIKPWRRIPDVCT 415
+PP G + W+R PD CT
Sbjct: 43 APPAGDGIVGEWQRSPDCCT 62
>03_03_0164 - 14979364-14979479,14979613-14980102
Length = 201
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 216 GSGALGERGDAAAPWRRRFEVHVPAGFGASVGRDRRR 326
GSG G G A W++R V +G G + GR R+R
Sbjct: 53 GSGVGGGNGKARGQWQQRRGGGVGSGNGEARGRRRQR 89
>01_06_1817 - 40091188-40092198
Length = 336
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 165 IDDNVDSDVGAHPGSDLGSGALGERGDAAAPWRRRFEVHVPAGFGASVG 311
I NV ++VGA G+ G+GA G A R +V A GA VG
Sbjct: 219 IGANVGANVGAGVGAGAGAGA-GAGAGVGAGARAGIGANVGANVGAGVG 266
>12_02_0482 +
19541017-19541139,19542687-19542765,19542971-19543025,
19543179-19543268,19543344-19543413,19543580-19543850,
19543969-19544026,19544113-19544237,19544326-19544397,
19544484-19544617
Length = 358
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 157 SWKSTIMSTATWVRTP--GATWVAAHSESEATLQL 255
SW+S M A+W P A+W+AA E L+L
Sbjct: 14 SWRSAPMVAASWRSAPMAAASWLAAPPPVETMLKL 48
>06_03_0218 + 18219956-18220555
Length = 199
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/50 (42%), Positives = 22/50 (44%)
Frame = +3
Query: 216 GSGALGERGDAAAPWRRRFEVHVPAGFGASVGRDRRRF*REHVTRGSLRR 365
G G GD AA RR E AG G GR+RR R T G L R
Sbjct: 143 GGGGDAGGGDGAAG-RRTVEAAQAAGGGRQRGRERRATGRWRGTTGRLGR 191
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 463 SYHCINKITVYLSVRNCTNIRNSSPRLYKA*VLRRREPRVTCSR 332
++H + KIT YL R +RN K VL R+ V+C +
Sbjct: 74 NHHRVPKITAYLEQRCYKELRNEQYGFVKVVVLIYRKLLVSCKK 117
>01_07_0378 -
43167805-43169152,43169258-43169326,43169473-43169544,
43169677-43169745,43169979-43171161,43171239-43171365
Length = 955
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 186 DVGAHPGSDLGSGALGERGDAAAPWRRRFEVHVP 287
D+ PGS L E D AA RRF++++P
Sbjct: 291 DLNGFPGSGWACSYLAEIEDDAAATARRFKLYIP 324
>01_05_0281 -
20334578-20334961,20335859-20336005,20336088-20336141,
20336391-20336555,20337331-20337855
Length = 424
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 174 NVDSDVGAHPGSDLGSGALGERGDAAAPWRRRFEV 278
N +D GAH + +GSG G A + R EV
Sbjct: 340 NTRADGGAHTATQMGSGHFAGEGFGGASYFRNLEV 374
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -2
Query: 155 PGEVSSISHNTSLFA-TLAFSLHNVSLERSVPPPGGRDATHTRCDPRA 15
PGE+S HNTS A L F L SVP + D RA
Sbjct: 660 PGEISDTKHNTSAPAKKLGFGLIGSGKRTSVPSVFAEEDDEDNDDKRA 707
>08_02_0051 + 11683636-11684046
Length = 136
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 183 SDVGAHPGSDLGSGALGERGDAAAPWRRRFEVHVPAGFG 299
+ +GA PG D G GE+G A R++ E G G
Sbjct: 49 ASMGARPGGDGGGWQRGEKGWLAVVGRKQHEEKAAPGDG 87
>04_04_1371 +
32995337-32995358,32995745-32995822,32995876-32996019,
32997595-32997930,32998014-32998166,32998286-32998501,
32998600-33000695
Length = 1014
Score = 27.5 bits (58), Expect = 7.0
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = -2
Query: 245 VASLSECAATQVAPGVRTHVAVDIIVDFHDPGEVSSISHNTSLFATLAFSLHNVSLERS- 69
V L+EC T++ PG T ++ +D+ + S SH + A SL RS
Sbjct: 55 VKLLAECTKTKLLPGAVTDATCELRLDYSN----ISTSHGCFVEERTALMDIGSSLTRSN 110
Query: 68 --VPPPGGR 48
VPP GR
Sbjct: 111 GTVPPSWGR 119
>04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054
Length = 242
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Frame = +3
Query: 168 DDNVDSDVGAHPGSDLGSGALGER---GDAAAPWRRRFEVHV 284
+DN D G G GAL R G A+APW H+
Sbjct: 126 EDNDDGGFSGGGGGGCGGGALAARSCAGAASAPWHAARAQHI 167
>02_05_1007 +
33452774-33452993,33453028-33453122,33453208-33453329,
33453392-33453694,33454657-33454918,33455039-33455140,
33455931-33457151,33457250-33457342
Length = 805
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 269 VRGPCPCRLRSQRWT*PPSILTGTRYSRLSPP--QDSGFIKPWRR 397
++GP P + +Q+WT PP T TR P QD+ + P+ R
Sbjct: 209 IQGPKPDNVSTQKWTPPPPPST-TRPDIAGTPKIQDNFIMSPFAR 252
>01_06_0958 -
33357689-33357997,33358135-33358284,33358371-33358511,
33359807-33360592
Length = 461
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 204 GSDLGSGALGERGDAAAPWR 263
G+D G+G G RGDA PW+
Sbjct: 219 GTDAGNGG-GARGDAGFPWK 237
>01_05_0648 +
23915469-23915898,23916551-23916619,23916956-23917315,
23918435-23918973
Length = 465
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 326 STAVTSNAGSEAGRDMDLEPSTPWSCSVASLSECAA--TQVAPGVR 195
+ A S + S AG ++ P TP + ++ S++ C A VAP R
Sbjct: 20 AAAPASASASAAGAFSEVPPETPCAAAIVSVAPCLAHVAVVAPPAR 65
>04_04_1376 +
33058306-33059763,33059851-33059991,33060594-33060644,
33061094-33061171,33061245-33061388,33061871-33062002
Length = 667
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 152 GEVSSISH-NTSLFATLAFSLHNVSLERSVPPP 57
G +S SH N S+F +A S HN S ++P P
Sbjct: 234 GASTSFSHRNDSIFHNIASSSHNPSPSTNLPSP 266
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 162 EIDDNVDSDVGAHPGSDLGSGAL-GERGDAAAPWRRRFE-VHVPAGFGASVGRDRRR 326
E ++ +D + + GS +G ER P R E VHVP+ FG+S +D +R
Sbjct: 1200 EEENGLDPEDAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPSDFGSSKSQDNQR 1256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,736
Number of Sequences: 37544
Number of extensions: 347128
Number of successful extensions: 1354
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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