Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K09
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81496-1|CAB04067.1|  226|Caenorhabditis elegans Hypothetical pr...    30   0.88 
U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   2.7  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   2.7  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   2.7  
AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain (...    29   2.7  
AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    27   6.2  

>Z81496-1|CAB04067.1|  226|Caenorhabditis elegans Hypothetical
           protein F09C6.1 protein.
          Length = 226

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 115 NNEVLCDIEETSPGSWKSTIMSTATW-VRTPGATWVAAHSESEATLQLH 258
           NN++  D    +   W        +W  ++   TW++AH +  A LQ H
Sbjct: 166 NNQLTLDYHVNASEFWTPKKNDNGSWSFQSANGTWLSAHKDGRACLQPH 214


>U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical
           protein R12C12.3 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 145 FPLYHITLHCSRHSLSVYTTSVWSAPCRPL 56
           +PL  +T  CS + + + T   W A CRPL
Sbjct: 94  YPLCMMTKSCSLYLMVLITIERWIAVCRPL 123


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 166  STIMSTATWVRTPGATWVAAHSES--EATLQLHGVEGSRSMSLPASEPA 306
            +TI  TAT V  P   W+ A+ E+   ATLQL+ +    S +  A   A
Sbjct: 1159 ATITCTATGVPQPKVHWIKANGETVDSATLQLYDLVKDTSATCVAENNA 1207


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 166  STIMSTATWVRTPGATWVAAHSES--EATLQLHGVEGSRSMSLPASEPA 306
            +TI  TAT V  P   W+ A+ E+   ATLQL+ +    S +  A   A
Sbjct: 1222 ATITCTATGVPQPKVHWIKANGETVDSATLQLYDLVKDTSATCVAENNA 1270


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 166  STIMSTATWVRTPGATWVAAHSES--EATLQLHGVEGSRSMSLPASEPA 306
            +TI  TAT V  P   W+ A+ E+   ATLQL+ +    S +  A   A
Sbjct: 1222 ATITCTATGVPQPKVHWIKANGETVDSATLQLYDLVKDTSATCVAENNA 1270


>AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 19 protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 168 DDNVDSDVGAHPGSDL--GSGALGERGDAAAPWRRRFE 275
           DD+ D D+G HP   L  G G +G  G    P RR+F+
Sbjct: 107 DDDDDDDMGGHPFGGLFGGMGGMGRGG----PRRRKFQ 140


>AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2b protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 40  VASRPPGGGTERSKLTLCRLK-ASVANNEVLCDIEET 147
           V  RPP  G E ++  +CR+    VA+  V CD+  T
Sbjct: 226 VYCRPPEDGGEDAECDVCRISDCDVADEMVFCDMCNT 262


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 40  VASRPPGGGTERSKLTLCRLK-ASVANNEVLCDIEET 147
           V  RPP  G E ++  +CR+    VA+  V CD+  T
Sbjct: 267 VYCRPPEDGGEDAECDVCRISDCDVADEMVFCDMCNT 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,334,284
Number of Sequences: 27780
Number of extensions: 246170
Number of successful extensions: 796
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)