Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K07
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    74   9e-15
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    74   9e-15
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    27   0.98 

>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 73.7 bits (173), Expect = 9e-15
 Identities = 36/82 (43%), Positives = 45/82 (54%)
 Frame = +3

Query: 9   LHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQC 188
           LHLV              Y+TP           LAVL+YYKV+++G + RLRREC    C
Sbjct: 67  LHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNC 124

Query: 189 GAGVFMAVMEDRHYCGKCHSTM 254
           GA  FMA  +DR YCG+CH T+
Sbjct: 125 GASTFMANHKDRLYCGRCHLTL 146


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 73.7 bits (173), Expect = 9e-15
 Identities = 36/82 (43%), Positives = 45/82 (54%)
 Frame = +3

Query: 9   LHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQC 188
           LHLV              Y+TP           LAVL+YYKV+++G + RLRREC    C
Sbjct: 67  LHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNC 124

Query: 189 GAGVFMAVMEDRHYCGKCHSTM 254
           GA  FMA  +DR YCG+CH T+
Sbjct: 125 GASTFMANHKDRLYCGRCHLTL 146


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +3

Query: 123 YYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 272
           Y ++ +N +     R C  E      F  V++D H   KC + ++    D
Sbjct: 228 YLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,073,231
Number of Sequences: 5004
Number of extensions: 15053
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)