Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K07
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0108 - 12628711-12629178                                         77   6e-15
05_01_0438 + 3475017-3475484                                           76   8e-15
10_08_0470 - 18151326-18151769                                         39   0.001
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297...    27   3.7  
11_05_0062 + 18749405-18749449,18751328-18751465,18752625-187526...    26   8.6  

>01_03_0108 - 12628711-12629178
          Length = 155

 Score = 76.6 bits (180), Expect = 6e-15
 Identities = 38/85 (44%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +3

Query: 9   LHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDE-NGKIHRLRRECTGEQ 185
           LHLV              Y+ P           LAVL++YKVD+  GK+ RLR+EC   +
Sbjct: 67  LHLVLRLRGGAKKRKKKTYTKPKKQKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNAE 126

Query: 186 CGAGVFMAVMEDRHYCGKCHSTMVF 260
           CGAG FMA   DRHYCGKC  T V+
Sbjct: 127 CGAGTFMANHFDRHYCGKCGLTYVY 151


>05_01_0438 + 3475017-3475484
          Length = 155

 Score = 76.2 bits (179), Expect = 8e-15
 Identities = 38/85 (44%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +3

Query: 9   LHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDE-NGKIHRLRRECTGEQ 185
           LHLV              Y+ P           LAVL++YKVD+  GK+ RLR+EC    
Sbjct: 67  LHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNND 126

Query: 186 CGAGVFMAVMEDRHYCGKCHSTMVF 260
           CGAG FMA   DRHYCGKC  T V+
Sbjct: 127 CGAGTFMANHFDRHYCGKCGLTYVY 151


>10_08_0470 - 18151326-18151769
          Length = 147

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 63  YSTPXXXXXXXXXXXLAVLRYYKVDE-NGKIHRLRRECTGEQC-GAGVFMAVMED 221
           Y+TP           LAVLR+Y+VD+  GK+ RLR  C   +C   G  MA   D
Sbjct: 93  YATPKKGKHEHRKEELAVLRHYRVDDVMGKVERLRLMCPNPECKDVGALMAKHHD 147


>08_01_0332 +
           2971361-2971439,2971596-2971783,2971985-2972062,
           2972354-2972425,2972513-2972631,2972858-2972942,
           2973096-2973185,2973268-2973369,2973448-2973624,
           2973874-2973954,2974511-2974582,2974662-2974756,
           2974831-2974919,2975016-2975078,2975161-2975204,
           2975554-2975685
          Length = 521

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 378 FFFFFFHCVKILLENPSY 325
           FFFFFF C  IL  + +Y
Sbjct: 307 FFFFFFFCANILFHHLNY 324


>11_05_0062 +
           18749405-18749449,18751328-18751465,18752625-18752675,
           18752905-18753014,18753483-18753522,18753758-18753807,
           18754066-18754114,18754212-18754256
          Length = 175

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 283 GVYLSSSLKTIVLWHLPQ*CRSSITAMNTPAP 188
           G++ S SL  +V +HL + C   I   N P P
Sbjct: 19  GIFFSISLADLVSFHLGRYCAKFIPNQNYPFP 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,960,630
Number of Sequences: 37544
Number of extensions: 124748
Number of successful extensions: 294
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)