Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_K07
(378 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X63237-1|CAA44911.1| 156|Homo sapiens ubiquitin protein. 96 4e-20
S79522-1|AAB21188.1| 156|Homo sapiens ubiquitin carboxyl extens... 96 4e-20
M10939-1|AAA36788.1| 152|Homo sapiens protein ( Human ubiquitin... 96 4e-20
BC066293-1|AAH66293.1| 156|Homo sapiens ribosomal protein S27a ... 96 4e-20
BC001392-1|AAH01392.1| 156|Homo sapiens ribosomal protein S27a ... 96 4e-20
AB061854-1|BAB79488.1| 121|Homo sapiens ribosomal protein S27A ... 96 4e-20
BC053371-1|AAH53371.1| 156|Homo sapiens ribosomal protein S27a ... 92 5e-19
AB007163-1|BAA25826.1| 51|Homo sapiens ribosomal protein S27a ... 85 1e-16
>X63237-1|CAA44911.1| 156|Homo sapiens ubiquitin protein.
Length = 156
Score = 95.9 bits (228), Expect = 4e-20
Identities = 48/90 (53%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +3
Query: 9 LHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQC 188
LHLV +Y+TP LAVL+YYKVDENGKI RLRREC ++C
Sbjct: 67 LHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDEC 126
Query: 189 GAGVFMAVMEDRHYCGKCHSTMVF-KDDDK 275
GAGVFMA DRHYCGKC T F K +DK
Sbjct: 127 GAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
>S79522-1|AAB21188.1| 156|Homo sapiens ubiquitin carboxyl extension
protein protein.
Length = 156
Score = 95.9 bits (228), Expect = 4e-20
Identities = 48/90 (53%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +3
Query: 9 LHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQC 188
LHLV +Y+TP LAVL+YYKVDENGKI RLRREC ++C
Sbjct: 67 LHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDEC 126
Query: 189 GAGVFMAVMEDRHYCGKCHSTMVF-KDDDK 275
GAGVFMA DRHYCGKC T F K +DK
Sbjct: 127 GAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
>M10939-1|AAA36788.1| 152|Homo sapiens protein ( Human ubiquitin
mRNA, 3' end. ).
Length = 152
Score = 95.9 bits (228), Expect = 4e-20
Identities = 48/90 (53%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +3
Query: 9 LHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQC 188
LHLV +Y+TP LAVL+YYKVDENGKI RLRREC ++C
Sbjct: 63 LHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDEC 122
Query: 189 GAGVFMAVMEDRHYCGKCHSTMVF-KDDDK 275
GAGVFMA DRHYCGKC T F K +DK
Sbjct: 123 GAGVFMASHFDRHYCGKCCLTYCFNKPEDK 152
>BC066293-1|AAH66293.1| 156|Homo sapiens ribosomal protein S27a
protein.
Length = 156
Score = 95.9 bits (228), Expect = 4e-20
Identities = 48/90 (53%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +3
Query: 9 LHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQC 188
LHLV +Y+TP LAVL+YYKVDENGKI RLRREC ++C
Sbjct: 67 LHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDEC 126
Query: 189 GAGVFMAVMEDRHYCGKCHSTMVF-KDDDK 275
GAGVFMA DRHYCGKC T F K +DK
Sbjct: 127 GAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
>BC001392-1|AAH01392.1| 156|Homo sapiens ribosomal protein S27a
protein.
Length = 156
Score = 95.9 bits (228), Expect = 4e-20
Identities = 48/90 (53%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +3
Query: 9 LHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQC 188
LHLV +Y+TP LAVL+YYKVDENGKI RLRREC ++C
Sbjct: 67 LHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDEC 126
Query: 189 GAGVFMAVMEDRHYCGKCHSTMVF-KDDDK 275
GAGVFMA DRHYCGKC T F K +DK
Sbjct: 127 GAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
>AB061854-1|BAB79488.1| 121|Homo sapiens ribosomal protein S27A
protein.
Length = 121
Score = 95.9 bits (228), Expect = 4e-20
Identities = 48/90 (53%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +3
Query: 9 LHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQC 188
LHLV +Y+TP LAVL+YYKVDENGKI RLRREC ++C
Sbjct: 32 LHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDEC 91
Query: 189 GAGVFMAVMEDRHYCGKCHSTMVF-KDDDK 275
GAGVFMA DRHYCGKC T F K +DK
Sbjct: 92 GAGVFMASHFDRHYCGKCCLTYCFNKPEDK 121
>BC053371-1|AAH53371.1| 156|Homo sapiens ribosomal protein S27a
protein.
Length = 156
Score = 92.3 bits (219), Expect = 5e-19
Identities = 47/90 (52%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +3
Query: 9 LHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQC 188
LHLV + +TP LAVL+YYKVDENGKI RLRREC ++C
Sbjct: 67 LHLVLRLRGGAKKRKKKSCTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDEC 126
Query: 189 GAGVFMAVMEDRHYCGKCHSTMVF-KDDDK 275
GAGVFMA DRHYCGKC T F K +DK
Sbjct: 127 GAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
>AB007163-1|BAA25826.1| 51|Homo sapiens ribosomal protein S27a
protein.
Length = 51
Score = 84.6 bits (200), Expect = 1e-16
Identities = 36/45 (80%), Positives = 39/45 (86%)
Frame = +3
Query: 108 LAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKC 242
LAVL+YYKVDENGKI RLRREC ++CGAGVFMA DRHYCGKC
Sbjct: 3 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKC 47
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,207,335
Number of Sequences: 237096
Number of extensions: 640560
Number of successful extensions: 1057
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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