Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K07
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16530-1|AAA28161.1|  163|Caenorhabditis elegans ubiquitin-like:...    87   5e-18
AC006651-4|AAF39865.1|  163|Caenorhabditis elegans Ubiquitin-lik...    87   5e-18
Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z46933-1|CAA87034.1|  142|Caenorhabditis elegans Hypothetical pr...    28   1.9  

>L16530-1|AAA28161.1|  163|Caenorhabditis elegans
           ubiquitin-like:ribosomal proteinfusion protein protein.
          Length = 163

 Score = 86.6 bits (205), Expect = 5e-18
 Identities = 37/65 (56%), Positives = 44/65 (67%)
 Frame = +3

Query: 63  YSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKC 242
           Y+TP           LAVL+YYK+DENGKI RLR+EC    CG GVFMA   +RHYCG+C
Sbjct: 79  YTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRC 138

Query: 243 HSTMV 257
           H T+V
Sbjct: 139 HDTLV 143


>AC006651-4|AAF39865.1|  163|Caenorhabditis elegans Ubiquitin-like
           family protein 1,isoform a protein.
          Length = 163

 Score = 86.6 bits (205), Expect = 5e-18
 Identities = 37/65 (56%), Positives = 44/65 (67%)
 Frame = +3

Query: 63  YSTPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKC 242
           Y+TP           LAVL+YYK+DENGKI RLR+EC    CG GVFMA   +RHYCG+C
Sbjct: 79  YTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRC 138

Query: 243 HSTMV 257
           H T+V
Sbjct: 139 HDTLV 143


>Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical
           protein K08C9.7 protein.
          Length = 154

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 120 RYYKVDENGKIHRL 161
           +Y+K+DENGKI RL
Sbjct: 111 KYFKIDENGKISRL 124


>Z46933-1|CAA87034.1|  142|Caenorhabditis elegans Hypothetical
           protein F34H10.1 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 120 RYYKVDENGKIHRL 161
           +Y+K+DENGKI RL
Sbjct: 99  KYFKIDENGKISRL 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,325,132
Number of Sequences: 27780
Number of extensions: 97220
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)