Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K06
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   0.31 
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    27   1.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   3.8  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   3.8  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   6.7  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 307 SNLISIIC--KLQFGFFFLCHLIVFLLSVQKPPNIILYRRLC 188
           SN+I +IC     F   F+C++   +LS    P+ I+Y +LC
Sbjct: 197 SNVIWLICFGAPLFLVIFICYIFFTVLSFFNVPDAIVYSKLC 238


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 449 YLFVLNVRFLY*KKKNWCFINALNCALKLYFL 354
           Y  + +++ L  K KNW  I+ +   +KL+F+
Sbjct: 122 YFNIRSIKSLSLKNKNWTIISIIEIPIKLHFI 153


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 5/25 (20%)
 Frame = -3

Query: 292  IICKL-QFGFF----FLCHLIVFLL 233
            +ICK+ +  FF    FLCHL++FL+
Sbjct: 1765 LICKMTELNFFAADFFLCHLLLFLM 1789


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 220 PPNIILYRRLCFRLNTIDMWSKIQF 146
           PPNI++ +R C R +  D  +  QF
Sbjct: 53  PPNILINKRTCSRYSFRDKLTSFQF 77


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 75  CIILFSFNRNKFYIIW 28
           C+ LFSF  +  Y++W
Sbjct: 59  CLFLFSFQNDNEYLVW 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,774
Number of Sequences: 5004
Number of extensions: 40969
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)