Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K06
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200...    33   0.18 
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    30   0.96 
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337...    27   6.8  

>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
            22220149-22220365,22220798-22221021,22221559-22221738,
            22221875-22222013,22222107-22222255,22223394-22223505,
            22223998-22224506,22224661-22224784,22224904-22225178,
            22225507-22225626,22225707-22225769,22225861-22226052,
            22226381-22226440,22226535-22226738,22226926-22227051,
            22227093-22227254,22227357-22227476,22227665-22227820,
            22227895-22227957,22228041-22228168,22228524-22228920,
            22229442-22229544,22229646-22229776,22230096-22230167,
            22230472-22230553,22231083-22231190,22231288-22231429,
            22231659-22231698,22231746-22231876,22232215-22232301,
            22232395-22232605,22232687-22232741,22232836-22232927,
            22233011-22233071,22233361-22233719
          Length = 2010

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -1

Query: 267  FFFYVI*LCSCYQYRNLRILFYIEDYVLD*IL---LICGPKFSSSVTKVRVTSLCVIILP 97
            F F+++ L   + Y+ + I  ++ D  L+ I    L+ GPKFS    K+  TSL  +I P
Sbjct: 1057 FSFHLVILYDNFLYKYMGIEVHLGDETLELINSHELLDGPKFSVKAAKIGTTSLYWLIWP 1116

Query: 96   VIF 88
              F
Sbjct: 1117 ASF 1119


>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
            27829243-27829449,27829611-27829704,27829806-27829870,
            27829946-27830398,27830467-27830760,27830837-27831295,
            27831367-27831588,27831755-27831968,27832039-27832494,
            27833280-27833389,27833468-27833644,27833758-27833979,
            27834048-27834167,27834274-27834383,27834552-27834607,
            27835252-27835440,27835602-27835775,27836066-27836281,
            27837066-27837106,27837971-27837986,27838330-27838415,
            27838737-27838910,27839093-27839149,27839720-27840064,
            27840175-27840216,27840377-27840496,27840575-27840724,
            27840830-27841534,27841609-27841954,27842978-27843080,
            27844817-27844860,27845905-27846101,27846322-27846344,
            27846802-27847122,27847406-27847579,27847843-27848047,
            27848817-27848880,27850097-27850278,27850291-27850350,
            27850688-27850748,27851249-27851313,27851491-27851569,
            27851656-27852021,27852442-27852790,27852887-27852989,
            27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = -1

Query: 471  GRYYDVKIPICIKCTFSILEKK---KLVLYQCFKL-RIKIIFFKV 349
            GR   +  P CI+C F++ ++K   K VL Q F L R+K+  F++
Sbjct: 1205 GRILILHNPDCIECLFNLFQEKNFRKHVLEQIFALFRVKLCIFQI 1249


>12_01_0428 +
           3374519-3375423,3376663-3376742,3377206-3377217,
           3377337-3377379,3378304-3380332
          Length = 1022

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 289 ICKLQFGFFFLCHLIVFLLSVQKPPNIILYRRLCFRLNTIDMW 161
           I  L  G +    ++ FL  ++ PP ++ Y R+C  ++ +  W
Sbjct: 834 IGNLDAGKWPFAPIMEFLHDIEPPPQLLRYLRICGHMDRLPDW 876


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,891,110
Number of Sequences: 37544
Number of extensions: 189905
Number of successful extensions: 342
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)