Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K06
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80026-3|AAC25845.2|  354|Caenorhabditis elegans Hypothetical pr...    32   0.28 
Z66567-5|CAA91492.4|  757|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm recep...    28   3.4  
AL132864-4|CAB63393.2|  240|Caenorhabditis elegans Hypothetical ...    27   6.0  
AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z81056-6|CAB02906.1|  398|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U80842-8|AAB37951.1|  244|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U80026-3|AAC25845.2|  354|Caenorhabditis elegans Hypothetical
           protein EGAP9.3 protein.
          Length = 354

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 513 VSLIMLGHELNWLCGRYYDVK-IPICIKCTFSILEKKKLVLY 391
           + +I+L   +NW+  RYYD + IP  + C  + ++K+K +L+
Sbjct: 21  ILVILLISIVNWMVPRYYDYRQIPTKVYCDKNEIDKQKYLLF 62


>Z66567-5|CAA91492.4|  757|Caenorhabditis elegans Hypothetical
           protein ZK455.8a protein.
          Length = 757

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 250 LIVFLLSVQKPPNIILYRRLCFRLNTIDMWSKIQFFCHES 131
           ++  ++SVQ+ P+ +    + + +   D W KI FF  ES
Sbjct: 172 IVYLIISVQQVPHAMFNLSVVYMMYQPDHWCKIPFFNEES 211


>U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm receptor
           protein 139 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 398 CFINALNCALKLYF-LKCCTHKMTFNRTK 315
           CF+  + CALK+YF LK   H M+  RTK
Sbjct: 212 CFLTIIFCALKIYFKLKEDIHSMS-ERTK 239


>AL132864-4|CAB63393.2|  240|Caenorhabditis elegans Hypothetical
           protein Y53H1A.2 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 201 YKIIFGGFCTDNKNTIK*HRKKNPNCN 281
           YK    G+C  + ++++ H KK PNC+
Sbjct: 197 YKCQKCGYCYQSPDSLRRHWKKTPNCD 223


>AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical
           protein Y38F1A.2 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 328 LIEQKLKSNLISIICKLQFGFFFLCHLIVFLLSVQKPPNII 206
           LI     +++ +++ +++ GF F+C +  FLL     P  I
Sbjct: 207 LIRNFFNNDIFTLVYQVRIGFVFICVITYFLLPSDMVPESI 247


>Z81056-6|CAB02906.1|  398|Caenorhabditis elegans Hypothetical
           protein F09F3.10 protein.
          Length = 398

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 347 CTHKMTFNRTKTKE*FN*YYLQVTIRIFFS 258
           C  K+ +N+TK  + FN Y   + I  FF+
Sbjct: 344 CAVKLVYNQTKVSDLFNAYKFDLYISSFFN 373


>U80842-8|AAB37951.1|  244|Caenorhabditis elegans Hypothetical
           protein ZC239.12 protein.
          Length = 244

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 316 KLKSNLISIICKLQFGFFFLCHLIVFLL 233
           K+    I ++C L F FFF   L++F L
Sbjct: 125 KVSDKEIFVVCSLYFDFFFQPVLVIFYL 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,968,070
Number of Sequences: 27780
Number of extensions: 226800
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)