Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K04
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    71   1e-13
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    27   1.3  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   3.1  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    25   4.1  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   5.4  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    25   5.4  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.4  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   7.1  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   7.1  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   7.1  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    24   9.4  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     24   9.4  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    24   9.4  

>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 47/110 (42%), Positives = 63/110 (57%), Gaps = 14/110 (12%)
 Frame = +3

Query: 162 RKKKKKKIVD----ELTVEDDIRGD----------DQENIEDVHGGWVGSDRDYTYDELL 299
           +KKKKKK  D    E  +E    GD          D EN+ + H  W+ SDRDY Y ELL
Sbjct: 117 KKKKKKKSADLSAFEKELEASSTGDATSDLSKQTFDSENMGE-HA-WLKSDRDYYYPELL 174

Query: 300 ERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTLH 449
            R F ++R  NP + +G+K+K+ + PP V R G KKT FAN ++I K +H
Sbjct: 175 NRFFTLLRTNNPEL-AGEKRKYTIVPPSVHREG-KKTIFANISDISKRMH 222


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -3

Query: 368 NKFLL-FS*YHARIFLTHNIEYTFQQFIISIITVASNPTTMHIFYIFLIISPYI--IFH 201
           NKFL   S Y   +FL+ ++ Y FQ F  +   +A + T +   Y+ L + P +  +FH
Sbjct: 160 NKFLCPLSKYLIYLFLSIHLFYVFQSFPWTYFCLAVSGTCISELYV-LFVHPVVQELFH 217


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 27/90 (30%), Positives = 40/90 (44%)
 Frame = -3

Query: 404 LCSYTYNLWWPHNKFLLFS*YHARIFLTHNIEYTFQQFIISIITVASNPTTMHIFYIFLI 225
           LCS  YN WW    F+        +F+  ++ Y F  F IS  ++A   T +  F   L+
Sbjct: 547 LCSENYNWWW--RSFITPGFCGIYVFI-FSVFYWF--FKISSSSLA---TAVLYFGYSLL 598

Query: 224 ISPYIIFHCKLINDFLLLLLSRVCEIYIQV 135
           IS  + F C  +  F   L   V +IY  +
Sbjct: 599 ISVLVFFLCGSVGFFGAFLF--VNKIYASI 626


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 165 KKKKKKIVDELTVEDDIRGDDQENIEDVHGGWVGSDRDY-TYDELLERVF 311
           KKKK +   + T + D + D Q+N+ + +     SD +Y T+D + + +F
Sbjct: 237 KKKKAESKRKRTSKPDFKNDVQQNVIEENN--ESSDNEYATFDRVKKDLF 284


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 204 EDDIRGDDQENIEDVHGGWVGSDRDYTYDELLERVFDIMREKNPSMVSGKK--QKFIMRP 377
           EDD    D + IE+     + S++D + +E LER  D + E   + V  ++  ++ +M  
Sbjct: 691 EDDFEEIDTDEIEEQSDWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEELMND 750

Query: 378 PQVVRIGTK 404
            Q++ +  K
Sbjct: 751 EQMLALDEK 759


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 165 KKKKKKIVDELTVED-DIRGDDQEN 236
           KKKKKK  D + ++D D+ G D +N
Sbjct: 23  KKKKKKEKDFVEIQDEDVAGWDDDN 47


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 437 ADFCEIGK*CFLCSYTYNLW 378
           A +C  G  CFLC  + +LW
Sbjct: 159 AAYCVFGIGCFLCGTSRSLW 178


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 21/91 (23%), Positives = 39/91 (42%)
 Frame = +3

Query: 168 KKKKKIVDELTVEDDIRGDDQENIEDVHGGWVGSDRDYTYDELLERVFDIMREKNPSMVS 347
           K  KKI +EL  ++D    ++EN +      V S+ +   +E  +         N S  S
Sbjct: 27  KNDKKIAEELPQDEDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTS 86

Query: 348 GKKQKFIMRPPQVVRIGTKKTSFANFTEICK 440
             ++   ++  + ++   K+  F   TEI K
Sbjct: 87  DIEKFSDLQLSENIQKAIKEMGFETMTEIQK 117


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 156 NARKKKKKKIVDELTVED-DIRGDDQENIEDVHGGWVGSDRDYTYDELLERVFDIMREKN 332
           +A+ K+ +K++++L+      R     N ED   G   SD D+    ++ R +     K 
Sbjct: 256 SAQSKEARKVLEDLSSSYVKQRPSVLVNTEDDENGIKPSDEDFLLKYMMNRGWRTSNTKQ 315

Query: 333 PS 338
           PS
Sbjct: 316 PS 317


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 324 EKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICK 440
           +K PS    + ++ ++ PPQ  ++  K     +FT++ K
Sbjct: 220 KKIPSKEDLETREVLLLPPQTSKLSNKNLDTKSFTDVNK 258


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 246 VHGGWVGSDRDYTYDELLERVFDIM 320
           +HGG    DRD T  +    VFD++
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFDVL 722


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -3

Query: 326 LTHNIEYTFQQFIISIITVASNPTTMHIFYIFLIISPYIIFHCKLINDFLLLLLS 162
           LTH        ++  +    S+ T    FY F  +  Y I   ++IN+ +LL ++
Sbjct: 208 LTHENNNKKNSYVFRLFDRVSSST----FYFFNSLFAYFIILLRIINEVILLAIN 258


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 248 HIFYIFLIISPYIIFH 201
           HI++I+    PY++FH
Sbjct: 206 HIYFIYAHGQPYVLFH 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,344
Number of Sequences: 5004
Number of extensions: 26143
Number of successful extensions: 108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)