Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_K04
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1699 - 28807154-28807218,28807324-28807466,28807570-288077... 101 3e-22
03_02_0903 + 12285874-12285918,12286715-12286820,12286906-122869... 97 6e-21
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 29 1.3
02_05_0092 + 25749070-25750638 28 3.0
05_04_0084 - 17788077-17789240 27 5.3
09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444 27 7.0
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 27 7.0
05_06_0033 + 25074301-25074393,25074680-25075203,25076367-250764... 27 9.2
>07_03_1699 -
28807154-28807218,28807324-28807466,28807570-28807715,
28808142-28808242,28808314-28808365,28808483-28808538,
28808616-28808721,28809314-28809358
Length = 237
Score = 101 bits (242), Expect = 3e-22
Identities = 54/114 (47%), Positives = 76/114 (66%), Gaps = 14/114 (12%)
Frame = +3
Query: 150 FTNARKKKKKKIVDELTVEDDIRGDD---QENIED------VHGG-----WVGSDRDYTY 287
FT +KKKKK + +L++ D G+D + +E+ V GG W G+DRDY Y
Sbjct: 59 FTGMKKKKKKPVDLDLSINDIGDGEDILDDQVVEEEEGEGIVLGGAPRYPWEGTDRDYNY 118
Query: 288 DELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTLH 449
DELL RVF+I+RE NP + +G +++ +MRPPQV+R GTKKT F NF ++CKT+H
Sbjct: 119 DELLGRVFNILRENNPDL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMH 171
>03_02_0903 +
12285874-12285918,12286715-12286820,12286906-12286961,
12287062-12287113,12287182-12287282,12287891-12288287,
12288852-12288937,12289061-12289078
Length = 286
Score = 97.1 bits (231), Expect = 6e-21
Identities = 52/112 (46%), Positives = 72/112 (64%), Gaps = 14/112 (12%)
Frame = +3
Query: 150 FTNARKKKKKKIVDELTVE---------DDIRGDDQENIEDVHGG-----WVGSDRDYTY 287
FT +KKKKK + + ++ DD G+D+E V GG W G+DRDY Y
Sbjct: 59 FTGMKKKKKKHVEHDTSLTEAGDGEDAIDDQIGEDEEGEGIVLGGATRYPWEGTDRDYKY 118
Query: 288 DELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKT 443
+ELL RVF+I+RE NP + +G +++ +MRPPQV+R GTKKT F NF ++CKT
Sbjct: 119 EELLGRVFNILRENNPDL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 195 LTVEDDIRGDDQENIEDVH-GGWVGSDRDY 281
L ED++ DD E E++H GGW D Y
Sbjct: 218 LKEEDEVDDDDDEREEEMHCGGWEDDDDHY 247
>02_05_0092 + 25749070-25750638
Length = 522
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 168 KKKKKIVDELTVEDDIRGDDQENIEDVHGGWVGSDRDYTYDELLER 305
KK++ DE ED+ R DD + D G D D YDE +E+
Sbjct: 163 KKEQNEKDE--EEDNGRDDDDDGYSDSDYGMDTDDDDDRYDECIEK 206
>05_04_0084 - 17788077-17789240
Length = 387
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 189 DELTVEDDIRGDDQENIEDVHGGWVGSDRDYTYDELLERV 308
DE+ ++ GD+ E ++ V DR TY+EL ER+
Sbjct: 136 DEVEEREEDEGDE-EGMQLAPAAVVSEDRSVTYEELRERL 174
>09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444
Length = 171
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 189 DELTVEDDIRGDDQENIEDVHGGWVGSDRDYTYDE 293
DE EDD GDD + ED G G D D D+
Sbjct: 87 DEDDDEDDEGGDDDDAEEDFSGDEGGEDEDDDDDD 121
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 153 TNARKKKKKKIVD-ELTVEDDIRGDDQENIE--DVHGG 257
TNAR K+KK D + EDD DD ++ E ++ GG
Sbjct: 423 TNARSNKRKKTKDVSESEEDDDEEDDSDDDENGEIKGG 460
>05_06_0033 +
25074301-25074393,25074680-25075203,25076367-25076442,
25076549-25076641,25077167-25077253,25077338-25078095,
25078447-25078575,25079145-25079265
Length = 626
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 291 ELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTL 446
E+LE E+ + S +KQ F++R P+V+ I K+ N +I + +
Sbjct: 194 EILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGINGGKINRNI 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,973,298
Number of Sequences: 37544
Number of extensions: 151721
Number of successful extensions: 523
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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