Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K04
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-12|CAB00049.1|  250|Caenorhabditis elegans Hypothetical p...    78   3e-15
Z75533-12|CAA99824.1|  250|Caenorhabditis elegans Hypothetical p...    78   3e-15
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    29   2.1  
AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical ...    29   2.1  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    29   2.1  
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p...    28   2.7  
L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans chrom...    28   2.7  
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.        28   2.7  
U61958-1|AAB03183.1|  416|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z79755-3|CAB02108.1|  355|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL032657-11|CAA21737.3|  372|Caenorhabditis elegans Hypothetical...    27   8.3  

>Z75712-12|CAB00049.1|  250|Caenorhabditis elegans Hypothetical
           protein K04G2.1 protein.
          Length = 250

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 4/99 (4%)
 Frame = +3

Query: 162 RKKKKKKIVDELTVEDDIR----GDDQENIEDVHGGWVGSDRDYTYDELLERVFDIMREK 329
           +KKK  K   E  VE+ +     G   +N+ D  G W     DYTY+E L  V+ +M++K
Sbjct: 48  KKKKTPKTAGEEVVEEKVPTLEIGIGAQNLIDAKGAWP----DYTYEEALTLVYQVMKDK 103

Query: 330 NPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTL 446
           NP   +G K+KF ++ P+V R G+KKT+F+NF EIC+ +
Sbjct: 104 NPDF-AGDKKKFAIKLPEVARAGSKKTAFSNFLEICRLM 141


>Z75533-12|CAA99824.1|  250|Caenorhabditis elegans Hypothetical
           protein K04G2.1 protein.
          Length = 250

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 4/99 (4%)
 Frame = +3

Query: 162 RKKKKKKIVDELTVEDDIR----GDDQENIEDVHGGWVGSDRDYTYDELLERVFDIMREK 329
           +KKK  K   E  VE+ +     G   +N+ D  G W     DYTY+E L  V+ +M++K
Sbjct: 48  KKKKTPKTAGEEVVEEKVPTLEIGIGAQNLIDAKGAWP----DYTYEEALTLVYQVMKDK 103

Query: 330 NPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTL 446
           NP   +G K+KF ++ P+V R G+KKT+F+NF EIC+ +
Sbjct: 104 NPDF-AGDKKKFAIKLPEVARAGSKKTAFSNFLEICRLM 141


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
           protein T06E4.3b protein.
          Length = 2514

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -3

Query: 278 ITVASNPTTMHIFYIFLIISPYIIFHCKLINDFLLLLLSRVC---EIYIQV*VINYLFLL 108
           + V S   T  I   F  +  ++  + +LINDF+ +L++++C   E Y ++ ++ Y   L
Sbjct: 546 LAVFSKSQTDRIANSFEPLILFLTDNLQLINDFITILIAKLCEKQEFYSELTILKYFKTL 605

Query: 107 RLRLF 93
           + +LF
Sbjct: 606 Q-KLF 609


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
           protein T06E4.3a protein.
          Length = 2531

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -3

Query: 278 ITVASNPTTMHIFYIFLIISPYIIFHCKLINDFLLLLLSRVC---EIYIQV*VINYLFLL 108
           + V S   T  I   F  +  ++  + +LINDF+ +L++++C   E Y ++ ++ Y   L
Sbjct: 546 LAVFSKSQTDRIANSFEPLILFLTDNLQLINDFITILIAKLCEKQEFYSELTILKYFKTL 605

Query: 107 RLRLF 93
           + +LF
Sbjct: 606 Q-KLF 609


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 427  VKLANDVFFVPIRTTCGGLIINFCFFPDT 341
            +KLAN  F  P R TCG  + +F    DT
Sbjct: 1464 LKLANLPFIAPTRATCGKKVFDFDVSEDT 1492


>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 253 VVGLEATVIILMMNCWNVYSILCVRKILAWYQ 348
           VV +  T++ ++MNCW   + +C  KILA+ Q
Sbjct: 69  VVCMPPTLVSMVMNCWMFGNYMC--KILAYLQ 98


>AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5c protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 253 VVGLEATVIILMMNCWNVYSILCVRKILAWYQ 348
           VV +  T++ ++MNCW   + +C  KILA+ Q
Sbjct: 69  VVCMPPTLVSMVMNCWMFGNYMC--KILAYLQ 98


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
           protein.
          Length = 2514

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -3

Query: 278 ITVASNPTTMHIFYIFLIISPYIIFHCKLINDFLLLLLSRVC---EIYIQV*VINYLFLL 108
           + V S   T  I   F  +  ++  + +LINDF+ +L++++C   E Y ++ ++ Y   L
Sbjct: 546 LAVFSKSQTDRIANSFEPLILFLTDNLQLINDFITILIAKLCEKQEFYSELTILKYFKTL 605

Query: 107 RLRLF 93
           + +LF
Sbjct: 606 Q-KLF 609


>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical
           protein T04A8.14 protein.
          Length = 1521

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 162 RKKKKKKIVDELTVEDDIRGDDQENIEDVHGGWVGSDRDYTYDELLER 305
           + K+KKK+V     ++D   D++EN +++  G++  D D   D   E+
Sbjct: 34  KSKRKKKMVASSDEDEDDDDDEEENRKEMQ-GFIADDDDEEEDAKSEK 80


>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
           protein T04A8.14 protein.
          Length = 1521

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 162 RKKKKKKIVDELTVEDDIRGDDQENIEDVHGGWVGSDRDYTYDELLER 305
           + K+KKK+V     ++D   D++EN +++  G++  D D   D   E+
Sbjct: 34  KSKRKKKMVASSDEDEDDDDDEEENRKEMQ-GFIADDDDEEEDAKSEK 80


>L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans
           chromodomain proteinprotein 1 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 168 KKKKKIVDELTVEDDIRGDDQENIEDV 248
           KKKK++ +E   E+ + G+D+E  ++V
Sbjct: 156 KKKKEVQEEPEEEESVEGEDEEESQEV 182


>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
          Length = 1521

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 162 RKKKKKKIVDELTVEDDIRGDDQENIEDVHGGWVGSDRDYTYDELLER 305
           + K+KKK+V     ++D   D++EN +++  G++  D D   D   E+
Sbjct: 34  KSKRKKKMVASSDEDEDDDDDEEENRKEMQ-GFIADDDDEEEDAKSEK 80


>U61958-1|AAB03183.1|  416|Caenorhabditis elegans Hypothetical
           protein C25A8.5 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 165 KKKKKKIVDELTVEDDIRGDDQENIEDVHGGWVGSDRDYTYDELLE-RVFDIMREKNPSM 341
           K++ K+I+ E  +   +R  D  N+   +G     +  Y   EL +    D   +KNP++
Sbjct: 161 KEQIKEIMREARL---MRNLDHPNVVKFYGVGASQEPLYVIMELADCGALDSYLQKNPNL 217

Query: 342 VSGKKQKFI 368
           + GKK + I
Sbjct: 218 LPGKKMEMI 226


>Z79755-3|CAB02108.1|  355|Caenorhabditis elegans Hypothetical
           protein F43G9.4 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 273 RDYTYDELLERVFDIMREKNPSM 341
           ++  YD + ER+F+ +R +NPS+
Sbjct: 231 KESDYDIVFERIFNFIRMQNPSL 253


>AL032657-11|CAA21737.3|  372|Caenorhabditis elegans Hypothetical
           protein Y47H9C.11 protein.
          Length = 372

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = +3

Query: 186 VDELTVEDDIRGDDQ---ENIEDVHGGWVGSDRDYTYDELLERVFDIMREKNPSMVSGKK 356
           +  LTV+D    DD+   EN+E ++      +      +  E++ DI+ + +PS  SG  
Sbjct: 264 IRHLTVKDTEFDDDEVFEENME-IYKPLTELEHWQKAKKNAEKIRDIV-QNSPSFQSGIV 321

Query: 357 QKFIMRPPQVVRIGTKKTSFANFTEICKTL 446
           +  I +P Q V+I  +  +  + + I KT+
Sbjct: 322 RSHIKKPYQFVKIFNRNVAQQSGSIIYKTM 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,990,084
Number of Sequences: 27780
Number of extensions: 147750
Number of successful extensions: 625
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)