Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K02
         (149 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    25   1.8  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    24   2.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    23   4.1  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    23   5.5  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    23   7.2  

>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 9   VKSSELTMDAKAISSAVAKFSAKFK 83
           +  ++L     A+ SAVAKF AK K
Sbjct: 452 IPEADLDEGLSAVESAVAKFDAKVK 476


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 136 YSAESVEDTTFLTFVKFILNLAENLATADEIA 41
           Y  ES +D+T  T     ++LAE  AT+ EI+
Sbjct: 186 YVTESDQDSTPATPFPMPMHLAEETATSPEIS 217


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 121 VEDTTFLTFVKFILNLAENLATADEIALASMVNSELFTLV 2
           ++DT  L   + I+N    + TA EI   + + +EL T++
Sbjct: 490 LDDTDELPLAELIMNHGIGIFTAKEICENNTITNELPTVL 529


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 85  ILNLAENLATADEIALASMVNS 20
           +L+L EN+ +A E  L S +NS
Sbjct: 299 LLSLVENICSASEGDLRSAINS 320


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 115 DTTFLTFVKFILNLAENLATADEIALA 35
           D + L ++     +AEN    DEIAL+
Sbjct: 84  DPSLLQYILNYFQMAENRTANDEIALS 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,761
Number of Sequences: 5004
Number of extensions: 5672
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 30
effective length of database: 2,212,358
effective search space used: 42034802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)