Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K02
         (149 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0647 - 4909311-4909412,4909538-4909610,4909930-4910047,491...    26   3.6  
02_05_1299 - 35553666-35554481,35554594-35554623                       25   6.3  

>01_01_0647 -
           4909311-4909412,4909538-4909610,4909930-4910047,
           4910133-4910229,4910350-4910445,4910536-4910631,
           4910725-4910871,4911877-4911987,4912582-4912620
          Length = 292

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 54  LMRLL*HPWSIQNFSPS 4
           L +LL HPW +QN  PS
Sbjct: 271 LHKLLEHPWIVQNADPS 287


>02_05_1299 - 35553666-35554481,35554594-35554623
          Length = 281

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 148 RASKYSAESVEDTTFLTFVK--FILNLAENLATADEIALASM 29
           R +K +  SV+D   LT +    +LN+ E L TAD+I   ++
Sbjct: 8   RRNKPACHSVKDKDRLTTLPNDVLLNILERLDTADDIRACTL 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,492
Number of Sequences: 37544
Number of extensions: 30526
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 14,793,348
effective HSP length: 30
effective length of database: 13,667,028
effective search space used: 259673532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)