Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K01
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   1.2  
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    26   2.7  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   6.2  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   8.2  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -2

Query: 481 TVSRYSCRGR*TPVNCYYLDTAKSVQLTKIWTAPYASGPKWNSFAQLWRIE 329
           T + + C     PVNC   DT K    TK    PY  G +  ++  L   E
Sbjct: 306 TNNNHLCDNCHKPVNCEVEDTCKEAYCTKCIINPYEFGFETGNYYTLSNFE 356


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 156 IKKAYNYDKVSEERREFEIKFLIGNTANETT*EVNRDFEH 275
           IK+ +N+D VSEE ++    + +G   +E    V R   H
Sbjct: 35  IKETFNFDNVSEEEKQEGGDYYLGKKEDELDEVVLRPNPH 74


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 360 GIPLPNYGV*NFKASSYSNFEFTRF*ISNVRNP 262
           GIPL N     FK  SY N     F ++  RNP
Sbjct: 659 GIPLANNSR-QFKRPSYGNMSRPSFELNGSRNP 690


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 435 AIISTPPNQYNLRRSGPHRTLVDPS 361
           A++    N Y  R   PH+ L DPS
Sbjct: 66  AVVLYGANVYRFRHPDPHQPLPDPS 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,874
Number of Sequences: 5004
Number of extensions: 33320
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)