Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K01
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0137 - 21080263-21081894                                         35   0.031
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910...    33   0.094
09_01_0028 + 486800-486890,486928-488009,488825-489190,489342-48...    27   6.2  
06_01_0997 - 7752634-7753128,7753280-7753708,7754403-7755196,775...    27   6.2  
06_01_0982 + 7627420-7628141,7628190-7628643,7629167-7629823,762...    27   6.2  

>09_06_0137 - 21080263-21081894
          Length = 543

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 180 CHSCKPFLLLLLITVDAINLLQAEATDFDQ*YCKPNIVNLNYLVEIFN 37
           CH+  P L L+L+ +  +N  +       +  CKPN+V  N L+ +FN
Sbjct: 391 CHTFNPMLKLVLV-LGNVNAARKLYERMQELQCKPNVVTYNLLMRLFN 437


>03_03_0226 +
           15590276-15590469,15590515-15590539,15590865-15591014,
           15591166-15591594
          Length = 265

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -2

Query: 436 CYYLDTAKSVQLTKIWTAPYASGPKWNSFAQLWRIEFQSVVVFEFRIH*ILNFECSKSRL 257
           C  LD   SV  T    +   +   W+S + +  ++   ++V EFR+H +L+  C+ S  
Sbjct: 152 CLVLDQRCSVSPTTSTLSGRVTTTAWSSTSDIAFLQLPLLLVVEFRLHQVLDQRCNDSPT 211

Query: 256 TS 251
           TS
Sbjct: 212 TS 213


>09_01_0028 +
           486800-486890,486928-488009,488825-489190,489342-489692
          Length = 629

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 408 YNLRRSGPHRTLVDPSGIPLPNYG 337
           Y L R+  +  LV+P+G P+ NYG
Sbjct: 456 YKLTRTSENMYLVEPNGGPVRNYG 479


>06_01_0997 -
           7752634-7753128,7753280-7753708,7754403-7755196,
           7755247-7755574
          Length = 681

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 408 YNLRRSGPHRTLVDPSGIPLPNYG 337
           Y L R+  +  LV+P+G P+ NYG
Sbjct: 460 YKLTRTSENMYLVEPNGGPVRNYG 483


>06_01_0982 +
           7627420-7628141,7628190-7628643,7629167-7629823,
           7629975-7630469
          Length = 775

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 408 YNLRRSGPHRTLVDPSGIPLPNYG 337
           Y L R+  +  LV+P+G P+ NYG
Sbjct: 554 YKLTRTSENMYLVEPNGGPVRNYG 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,938,788
Number of Sequences: 37544
Number of extensions: 184961
Number of successful extensions: 384
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)