Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K01
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40952-12|AAA81745.1|  297|Caenorhabditis elegans Hypothetical p...    28   3.2  
AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical ...    27   7.4  
AF039048-3|AAK68334.1|  246|Caenorhabditis elegans Hypothetical ...    27   7.4  
U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegr...    27   9.8  
AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U40952-12|AAA81745.1|  297|Caenorhabditis elegans Hypothetical
           protein C03B1.1 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 125 LIASTVINSSNKKGLQL*QSFRRKT*VRNKIFNWQHRK*NDLRS 256
           L A+   NS  +K ++  +S RR++   N+ FN +  K NDL S
Sbjct: 2   LPAANASNSLPRKSMRTVKSSRRRSLAPNECFNTEKEKGNDLFS 45


>AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical
           protein ZC190.6 protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 246 SFHLRCCQLKILFRTHVFLLKLCHSCKPFLLL 151
           S H  C  L ILF   ++LL + H    F  L
Sbjct: 34  SLHFNCRNLLILFSVSIYLLDISHGLTVFEFL 65


>AF039048-3|AAK68334.1|  246|Caenorhabditis elegans Hypothetical
           protein F16B4.6 protein.
          Length = 246

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 110 SAWRRLIASTVINSSNKKGLQL*QSF 187
           S WR  I  TV+ S NK   QL QSF
Sbjct: 49  SLWRNTILQTVVFSVNKATEQLKQSF 74


>U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegrin
           plus metalloprotease)family protein 4 protein.
          Length = 686

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 412 SVQLTKIWTAPYASGPKWNSFAQLWRIE 329
           S++  K+   P AS   +NS++++W +E
Sbjct: 251 SIKEIKVLDRPNASDSHYNSYSRIWEVE 278


>AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.5 protein.
          Length = 287

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 446 SSKLLLSRHRQISTTYEDLDRTVR*W 369
           + K L ++ R+ STT ED+ +T++ W
Sbjct: 207 NQKTLKNKKRRSSTTTEDVQKTIKRW 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,025,767
Number of Sequences: 27780
Number of extensions: 182002
Number of successful extensions: 341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)