Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J24
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            29   0.53 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.92 
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.7  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   4.9  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   4.9  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   4.9  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.6  

>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 322 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 429
           +  V  D C+R  D+ +P  I  +YQ  +P + AD+
Sbjct: 77  MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 359 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACL 216
           V+R + SGS+ G S    SA    A S     SLA + P+ A    C+
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERATPEVCV 170


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 371 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASV 246
           L  S +R  +   ++   PVR S A    R  +W + LAA++
Sbjct: 627 LPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAI 668


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 411 WHFELINVSDGVRLVRVGAAHASVRQ 334
           W  +LIN++DG+  +++   H+   Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 338 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 234
           GS   + PV+ S  YP+A  Q    S+  +V DT+
Sbjct: 285 GSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTS 319


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = -2

Query: 506 TNCVISGITRXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQRTQAS 339
           TN V + I++           S  TT S+    +   +S  +S M+    SAS     +S
Sbjct: 415 TNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAHSS 474

Query: 338 GSTAGSSPVRASAA-YPLARSQAWCKSLAAS 249
           GS++GSS   +SA+ + L+R   +   LA S
Sbjct: 475 GSSSGSSSATSSASTFNLSRFYVFAGILAIS 505


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
 Frame = -2

Query: 434 TTISACLFGTLS**TSPMA*GLSASVQRTQASGSTAGSSPVRAS--AAYPLARSQAWCKS 261
           +TIS  ++ + S  ++  +    +S   T +S S++ S+P+ +S  ++   + S +   S
Sbjct: 127 STISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS 186

Query: 260 LAASVPDTAWMHACLNGVISNNRLIGRSGEIPPNTCSQAGGRAA 129
            A+S    +   A      SN+ + G S      + S AG  ++
Sbjct: 187 SASSSGSISSADAKTVSASSNSTISGFSTSTTSASSSAAGNSSS 230


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 149 VNRCSEESPHFGQSVYY 199
           +N CS +SP F  S+YY
Sbjct: 19  LNECSIDSPSFRASMYY 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,789
Number of Sequences: 5004
Number of extensions: 39615
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)