Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_J24
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0312 + 2764744-2767390,2767632-2767990 33 0.17
07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997... 32 0.30
12_01_0221 + 1671231-1671349,1671613-1671745,1672011-1672190,167... 29 2.1
08_02_1557 + 27867977-27869134 29 2.1
07_03_1251 + 25186333-25188027,25188113-25188208,25188292-251883... 29 2.1
11_02_0037 - 7613632-7613727,7614452-7615507 29 2.8
08_01_0303 + 2493388-2493954 28 5.0
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 5.0
01_06_0240 + 27794741-27795466 28 5.0
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 5.0
12_01_0725 + 6428572-6428817 27 6.5
11_05_0096 - 19029632-19029937,19030376-19031197 27 6.5
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 27 6.5
03_05_0128 - 21076504-21076974,21077075-21077311,21077558-210776... 27 6.5
01_06_0579 + 30379243-30379617 27 6.5
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190... 27 8.7
05_04_0107 - 18039942-18040123,18040228-18040474 27 8.7
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 27 8.7
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 27 8.7
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 27 8.7
01_02_0011 + 10146944-10147067,10147871-10148025,10148137-101483... 27 8.7
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 32.7 bits (71), Expect = 0.17
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -2
Query: 341 SGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGV-ISNNRLIGRSGEIP 165
S S +G+ P A L Q W SLA +P++ L + +S N L SG IP
Sbjct: 330 SNSLSGTIPAAIGALPSLEVLQLWNNSLAGRLPESLGASRRLVRLDVSTNSL---SGPIP 386
Query: 164 PNTCSQAGGRAA 129
P C AG R A
Sbjct: 387 PGVC--AGNRLA 396
>07_03_1361 -
25998873-25999223,25999311-25999461,25999546-25999783,
25999898-26000108,26000210-26000340,26000909-26001037,
26001329-26002130
Length = 670
Score = 31.9 bits (69), Expect = 0.30
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = -2
Query: 371 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCK------SLAASVPDT-AWMHACLN 213
L+A+ T A+ G+ + YP+ S AWC A + DT A MHA N
Sbjct: 165 LNATADYTAAAARRFGTGEISFDPTYPVIYSMAWCTPDMAPGRCRACLADTIAQMHAYFN 224
Query: 212 GVISNNRLIG 183
RL+G
Sbjct: 225 PNAQGARLVG 234
>12_01_0221 +
1671231-1671349,1671613-1671745,1672011-1672190,
1672632-1672712,1672850-1673013,1673109-1673245,
1673492-1673607,1673725-1673958
Length = 387
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 162 RRNLPTSANQSIIRYHTIQTSVHPRGVRNR 251
+ NL + +S++RYH + TS G+R R
Sbjct: 196 KSNLNCTIKESLVRYHDVVTSAKKHGIRIR 225
>08_02_1557 + 27867977-27869134
Length = 385
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 314 VRASAAYPLARSQAWCKSLAASVP 243
V AS+AYP Q+ CKS AAS P
Sbjct: 218 VAASSAYPYRARQSSCKSSAASSP 241
>07_03_1251 +
25186333-25188027,25188113-25188208,25188292-25188381,
25188473-25188577,25188764-25188823,25188931-25188993,
25189077-25189172,25189982-25190146,25191104-25191277,
25191387-25191452,25191556-25191654,25192714-25192857,
25193312-25193401
Length = 980
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 329 AGSSPVRASAAYPLARSQA--WCKSLAASVPDTAWMHACLNGVISN 198
A SP A+AA P R++A +C P ++ +H CL G+ S+
Sbjct: 11 ASDSPA-AAAASPAVRAEALAYCARARDETPPSSLLHLCLYGLASS 55
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +1
Query: 28 GKICTSESEFGNAYSLARSCPKVQTPE-HSHHQMHAALPP 144
G + +G AY+ AR+ P P H HH H + P
Sbjct: 232 GLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271
>08_01_0303 + 2493388-2493954
Length = 188
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 226 CIHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRC 357
C HA+S AA +LH+ C R + L T L A VRC
Sbjct: 15 CHHAISRRSAAVELHR-CSRRRRPSPLTTTVALTRRRSPAAVRC 57
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/95 (21%), Positives = 45/95 (47%)
Frame = +1
Query: 187 ISLLLDITPFRQACIHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRCTDA 366
++ ++D T +++ +H+ +D+ ACD + L + +L +AC R +
Sbjct: 1267 LAAIVDDTNKQRSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMHDILNEACTRA-EL 1325
Query: 367 DKPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSY 471
K G+ K + D++++ + Q +E+SY
Sbjct: 1326 LKKEVDGE--SSKRRKAEMDLLIALQRVQESEKSY 1358
>01_06_0240 + 27794741-27795466
Length = 241
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 322 LPAVLPDACVRCTDADKPHAIGDV 393
+PA P A VRCT A KP A G +
Sbjct: 24 IPAATPSAIVRCTAAPKP-ATGSI 46
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 344 ASGSTAGSSPVRASAAY-PLARSQAWCKSLAASVPDTAWMHACLNG 210
+S +T+ SPVRAS+ Y + + A K + S +W+H G
Sbjct: 723 SSANTSSDSPVRASSEYHEVPPTDAEDKEIDESNQGESWVHGLAEG 768
>12_01_0725 + 6428572-6428817
Length = 81
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 378 VRLVRVGAAHA--SVRQHSRQQSREGQRRVSSRQVTGLVQVLSGVCSGHRVDARLSEWC 208
+ ++ GAA +V H+ RR + + +V+ SG CSGHR +A ++ WC
Sbjct: 16 ITMIACGAARKKDAVYVHAVTTPPSQNRRALQVRPSPVVEP-SGCCSGHRSEA-VASWC 72
>11_05_0096 - 19029632-19029937,19030376-19031197
Length = 375
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 259 KDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGD 390
+ L D+ G+ A+A + A PD ++CT D PH + D
Sbjct: 206 RGLRSLVDVGGGHGAVAKA--IAAAFPD--IKCTVMDLPHVVAD 245
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 199 LDITPFRQACIHAVSGTDAAKDL 267
LDIT RQ +H VSGTD KD+
Sbjct: 168 LDIT--RQFLLHIVSGTDVEKDV 188
>03_05_0128 -
21076504-21076974,21077075-21077311,21077558-21077682,
21082636-21082885
Length = 360
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 329 AGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNNRLIG-RSGEIPPNTC 153
AG++ + A++ + A SLAA+VP + L V +NN L+ + P N
Sbjct: 3 AGNNAIAAASFAIVVLVAAAASSLAAAVPAVYVLGDSLADVGNNNHLLTLLKADFPHNGI 62
Query: 152 SQAGGRA 132
GG+A
Sbjct: 63 DYPGGKA 69
>01_06_0579 + 30379243-30379617
Length = 124
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 122 RCTLLCHQPVNRCSEESPH 178
RCT+ CH P+ R S SPH
Sbjct: 10 RCTISCHSPMRRSS--SPH 26
>11_03_0184 +
11317787-11318198,11318337-11318671,11318756-11319048,
11319125-11319483,11319549-11319748,11319823-11320012,
11320084-11320188,11320262-11320338,11320428-11320649
Length = 730
Score = 27.1 bits (57), Expect = 8.7
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +2
Query: 5 EVTSDYLTERSAHLRVNLATHIAWRAAVLKSRLPSTPTTRCTLLCHQPVNRCSEESPHFG 184
+VT D L E AH+ + I WR A P+ T + H R S + F
Sbjct: 16 DVTEDNLKEMVAHVVLPAKEIIGWRPA-FGEAFPTPDTHEIVVFAHFFYGRFSLPTSRFF 74
Query: 185 QSV--YY*ISHH 214
+ + +Y IS H
Sbjct: 75 RGILNFYGISLH 86
>05_04_0107 - 18039942-18040123,18040228-18040474
Length = 142
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 155 RCSEESPHFGQSVYY*ISHHSDKRASTRCPEQTPLRTCT 271
RC G+ + + HH A+ R P TP++T T
Sbjct: 13 RCQLHLHRGGEQLVVVVVHHRAAAAADRLPHGTPIKTIT 51
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 353 RTQASGSTAGSSP-VRASAAYPLARSQAWCKSLAASVPDTAWMHACLNG 210
R A + A SSP V A A+P +R A L + W+H C +G
Sbjct: 503 RPAADAAAAASSPRVAAGDAFPSSRYDAML--LREDPRNLTWLHGCDDG 549
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = -2
Query: 323 SSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNNRLIGRSGEIPP 162
S PV L+ +Q W +A+ P +G+ + ++IG G P
Sbjct: 782 SFPVEGGLTLELSIAQFWSSGIASHEPTCVDFEIVFHGISVDQKIIGLDGSEAP 835
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 27.1 bits (57), Expect = 8.7
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +1
Query: 238 VSGTDAAKDLHQACDLARGYAALALTG--LLPAVLPDACVRCTDADKPHAIGDVYQLKVP 411
+ GT K +H AC + + + LTG L P +P R D A G++Y VP
Sbjct: 479 IRGTFTIKPVHFACSDSSPCSGITLTGVQLRPVQIPH--YRLNDPFCWQAFGELYTPTVP 536
Query: 412 NKQADIVVSFETTQSNEQSYKDL 480
+ + +N QSY DL
Sbjct: 537 --PIACLHLGKPAGNNLQSYHDL 557
>01_02_0011 +
10146944-10147067,10147871-10148025,10148137-10148319,
10149448-10149800,10150036-10150207
Length = 328
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = -2
Query: 371 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNNR 192
L+ASV R S+ A AAY R A +L PD + C+ V+ +
Sbjct: 196 LNASVHRVATYMRGTKSAYPNAVAAYVDVRDVARAHALVYEHPDARGRYLCIGSVLHRSE 255
Query: 191 LIGRSGEIPP 162
+ E+ P
Sbjct: 256 FVRLLRELFP 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,520
Number of Sequences: 37544
Number of extensions: 314071
Number of successful extensions: 1141
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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