Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J24
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036702-8|AAR85905.1|  377|Caenorhabditis elegans Hypothetical ...    28   3.4  
U97593-7|AAB52878.1|  591|Caenorhabditis elegans Prion-like-(q/n...    27   7.8  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    27   7.8  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    27   7.8  

>AF036702-8|AAR85905.1|  377|Caenorhabditis elegans Hypothetical
           protein F33D4.5 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 4   RGDFRLPNGKICTSESEFGNAYSLARSCPKVQTPEHSHHQMHAALPPACEQVFGGI 171
           +G FR  +   C S S+ G++    R   K++ P  ++  +   LP   E+   G+
Sbjct: 207 KGQFRTDDYDFCVSHSDMGSSILPLRGILKMRFPTRANGGLGENLPELIEKFKNGV 262


>U97593-7|AAB52878.1|  591|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform b protein.
          Length = 591

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = +1

Query: 289 RGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVP-NKQADIVVSFETTQSNEQ 465
           R Y     T  +P++ P   V   D      + DV+  K   N+   +   F T  + E 
Sbjct: 464 RNYEEKTETTTVPSLAPATNVTYKDLSNAQCVDDVFNKKTEMNESLPVGSVFNTHNNTEG 523

Query: 466 SYKD 477
            Y+D
Sbjct: 524 GYRD 527


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = +1

Query: 289 RGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVP-NKQADIVVSFETTQSNEQ 465
           R Y     T  +P++ P   V   D      + DV+  K   N+   +   F T  + E 
Sbjct: 798 RNYEEKTETTTVPSLAPATNVTYKDLSNAQCVDDVFNKKTEMNESLPVGSVFNTHNNTEG 857

Query: 466 SYKD 477
            Y+D
Sbjct: 858 GYRD 861


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
            isoform a protein.
          Length = 1175

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = +1

Query: 289  RGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVP-NKQADIVVSFETTQSNEQ 465
            R Y     T  +P++ P   V   D      + DV+  K   N+   +   F T  + E 
Sbjct: 1048 RNYEEKTETTTVPSLAPATNVTYKDLSNAQCVDDVFNKKTEMNESLPVGSVFNTHNNTEG 1107

Query: 466  SYKD 477
             Y+D
Sbjct: 1108 GYRD 1111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,622,380
Number of Sequences: 27780
Number of extensions: 240557
Number of successful extensions: 677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)