Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J23
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...   198   2e-51
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    72   3e-13
AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical...    43   1e-04
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    34   0.077
U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z81129-6|CAB03412.1|  799|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z81129-5|CAB03411.1|  779|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score =  198 bits (484), Expect = 2e-51
 Identities = 89/135 (65%), Positives = 108/135 (80%)
 Frame = +2

Query: 140 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 319
           ERTF+ +KPDGV RGLVG II RFE++G+KLV LK +  S+  L+ HY DL  +PFFP L
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFPSL 64

Query: 320 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 499
           ++YMSSGPVV MVW+GL+VVK GR MLGATNP  S PGTIRGD CIQ GRNI HGSD+V+
Sbjct: 65  IEYMSSGPVVAMVWQGLDVVKQGRSMLGATNPLASAPGTIRGDFCIQTGRNICHGSDAVD 124

Query: 500 SGNKEIALWFTEKEV 544
           S N+EIA WF ++E+
Sbjct: 125 SANREIAHWFKQEEI 139


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 38/79 (48%), Positives = 48/79 (60%)
 Frame = +2

Query: 299 RPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNII 478
           +PFFP L+ YMSSGPVV M+WEG +VVK  R +LG       +  +I  DL ++      
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEGCDVVKRARVILGEELEV-GEFRSIFYDLVVRDTHKGC 91

Query: 479 HGSDSVESGNKEIALWFTE 535
           H SDSV S N+E  LWF E
Sbjct: 92  HCSDSVASANREYVLWFEE 110


>AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.15 protein.
          Length = 139

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
 Frame = +2

Query: 125 MADQRERTFLMV-KPDGV-QRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 298
           +  Q    FL+V KP+ V  R L    +      G ++  ++ +  S  L +Q Y+    
Sbjct: 4   VGSQNALKFLVVLKPEIVAHRVLAQVALSELRSNGIEIEEMRQMKISGSLAKQLYAQHQG 63

Query: 299 RPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNII 478
           + F+  LV+++SSGPV+ M   G      G   L        QP  IR    +   RN+ 
Sbjct: 64  KFFYDRLVRHISSGPVIAMRVSGNARKCIGSSRLWPRLEPTVQP--IRQRFALSDVRNVA 121

Query: 479 HGSDSVESGNKEIALW 526
           H SD  ++  KE+ L+
Sbjct: 122 HASDE-DAAEKELQLF 136


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 346 CSHGLGGPECRQNWPSNARCYQSS*FSTRYHSRRLMYPS--WT 468
           C  GL G  C Q +PSNA+C +      R+ + R  Y S  WT
Sbjct: 336 CPEGLSGRYCEQVYPSNAQCARGKLTRERHINERECYQSAIWT 378


>U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical
           protein R03H10.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 266 LLQQHYSDLASRPFFPGLVKYMSSGPVVPMVW 361
           LL + + ++ S   +PG V+++   P++P  W
Sbjct: 144 LLDRCWKNVDSMELYPGTVQFLDKLPIIPSNW 175


>Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical
           protein T09E11.5 protein.
          Length = 578

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 544 DFL-FSEPESDFLVTRFDTIGTVDDITSNLD 455
           DFL  S+P+  F++TRF   G V + TS+ D
Sbjct: 415 DFLEASQPDYAFILTRFFATGVVANSTSSTD 445


>Z81129-6|CAB03412.1|  799|Caenorhabditis elegans Hypothetical
           protein T23F1.7b protein.
          Length = 799

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 284 SDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTG--RQMLGATNPADSQPGTIR 442
           SDL S  +      +  +  VV   WEG+ +V+ G  R + G  N A+  P   R
Sbjct: 66  SDLRSLRYPYAEFAFTDNNAVVMQSWEGVEIVEDGVSRLIFGRENGAEITPSADR 120


>Z81129-5|CAB03411.1|  779|Caenorhabditis elegans Hypothetical
           protein T23F1.7a protein.
          Length = 779

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 284 SDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTG--RQMLGATNPADSQPGTIR 442
           SDL S  +      +  +  VV   WEG+ +V+ G  R + G  N A+  P   R
Sbjct: 66  SDLRSLRYPYAEFAFTDNNAVVMQSWEGVEIVEDGVSRLIFGRENGAEITPSADR 120


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical protein
            F12F6.6 protein.
          Length = 1126

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 293  ASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQML---GATNPADSQPGTI 439
            AS  F      Y+    V+  VW G    +T  Q +   GATN  D++ GTI
Sbjct: 1003 ASSEFLENSKAYIIDNGVILFVWVGSACPQTWVQDVFGVGATNQIDTESGTI 1054


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,714,330
Number of Sequences: 27780
Number of extensions: 264282
Number of successful extensions: 797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)