Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_J22
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 218 4e-58
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 218 4e-58
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 218 4e-58
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 27 2.0
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 3.5
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 3.5
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 25 6.1
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 6.1
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 25 6.1
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 218 bits (532), Expect = 4e-58
Identities = 99/150 (66%), Positives = 121/150 (80%)
Frame = +3
Query: 39 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 218
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 219 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 398
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 399 GDERRLARDSGNFATVIGHNPDAKRTRVKL 488
GD L R SGN+ ++GH+ D +TRVKL
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKL 149
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 218 bits (532), Expect = 4e-58
Identities = 99/150 (66%), Positives = 121/150 (80%)
Frame = +3
Query: 39 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 218
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 219 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 398
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 399 GDERRLARDSGNFATVIGHNPDAKRTRVKL 488
GD L R SGN+ ++GH+ D +TRVKL
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKL 149
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 218 bits (532), Expect = 4e-58
Identities = 99/150 (66%), Positives = 121/150 (80%)
Frame = +3
Query: 39 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 218
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 219 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 398
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 399 GDERRLARDSGNFATVIGHNPDAKRTRVKL 488
GD L R SGN+ ++GH+ D +TRVKL
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKL 149
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 2.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 451 PITVAKLPESRASRLSSPIFSSKLHTIVPSGIAPTG 344
P ++ K+P + LSSP+ +S PSG+ PTG
Sbjct: 402 PNSIYKIPSASMVNLSSPLVTS------PSGLNPTG 431
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 3.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 305 LWQESNSRSWQCNACGCYA 361
LW++ CNACG YA
Sbjct: 429 LWRKDRHGQTVCNACGLYA 447
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 305 LWQESNSR-SWQCNACGCYA*RY 370
LW+ ++ + ++ CNACG Y +Y
Sbjct: 375 LWRRTSDKLNFLCNACGLYNKQY 397
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 3.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 305 LWQESNSRSWQCNACGCY 358
LW+ S CNACG Y
Sbjct: 22 LWRRGPDNSLLCNACGLY 39
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 305 LWQESNSRSWQCNACGCY 358
LW+ S + CNACG Y
Sbjct: 182 LWRRDESGNPICNACGLY 199
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 2 HEGRLDLIDGLNYGSC 49
+EG LDL+ L YG C
Sbjct: 85 NEGSLDLLGALQYGQC 100
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 60 QRKGAGSVFVSHTKKRKGAPKLRSLD 137
+R+G+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 462 PDCDL*LWQNCQSREPVVSHHPSFLPNY 379
PD + LW + SR + ++P FLP +
Sbjct: 111 PDYEYILWTDEMSRNFIADNYPWFLPYF 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,956
Number of Sequences: 5004
Number of extensions: 44450
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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