Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J22
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      221   2e-58
11_06_0377 - 22900042-22900452,22900527-22902236                       30   1.1  
03_02_0251 - 6821612-6823405,6823738-6823878                           27   8.1  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  221 bits (540), Expect = 2e-58
 Identities = 98/150 (65%), Positives = 122/150 (81%)
 Frame = +3

Query: 39  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 218
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 219 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 398
           V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120

Query: 399 GDERRLARDSGNFATVIGHNPDAKRTRVKL 488
           GD    AR SG++A VI HNPD   +R+KL
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKL 150


>11_06_0377 - 22900042-22900452,22900527-22902236
          Length = 706

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 318 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDERRL-ARDSGNFATVIGHNPDAKRTRVK 485
           A L+ G   P+G + E   VC L +   DE R+ A  +G    + G  PD +  RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427


>03_02_0251 - 6821612-6823405,6823738-6823878
          Length = 644

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +1

Query: 229 VIRTSSRRAKNCSLLQKVFILVNL-FTVARKQL*KLAM*CLWVLCLKVQL-CVIWKKRWV 402
           V+R S+R A    +    F LV +   VA     +L    LW+  L  Q  C +W  R V
Sbjct: 418 VLRGSARPASGARINLASFYLVGMPVGVALAFGARLGFAGLWLGLLAAQAACAVWMARAV 477

Query: 403 MRDDWLATLAILPQL 447
              DW   +A   +L
Sbjct: 478 AATDWDVEVARAKEL 492


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,095,726
Number of Sequences: 37544
Number of extensions: 309538
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)