Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J20
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1452 + 33698987-33699037,33699202-33699284,33699932-337000...    72   2e-13
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931...    30   0.50 
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159...    27   3.6  
04_04_1669 - 35222817-35223434,35223530-35223715,35223960-35224106     27   3.6  
04_04_1423 - 33455818-33457076,33457165-33457201                       27   3.6  
08_02_0107 + 12494650-12495270,12507463-12508146,12508325-125084...    27   4.7  
09_02_0555 - 10588685-10592038                                         26   8.2  

>04_04_1452 +
           33698987-33699037,33699202-33699284,33699932-33700007,
           33700566-33700697,33701259-33701407,33702240-33702322,
           33703272-33703347,33703547-33703622,33703701-33703733,
           33703816-33703884,33704166-33704272,33705002-33705074,
           33705264-33705302,33705679-33705773,33705992-33706098,
           33706288-33706361
          Length = 440

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 31/65 (47%), Positives = 47/65 (72%)
 Frame = +2

Query: 26  ESSTGSSTSNRVRTTLTIRVENIDFDTQACVLRLKGRNIVENQYVKMGAYHTLDLELNRK 205
           E ++G   + RVR  L I VE++D+D +  VLR++G+NI EN +VK+G +HT++LEL R+
Sbjct: 50  EMASGGRDAERVRLKLEIVVESVDYDKEGSVLRVRGKNITENDHVKIGQFHTVELELKRQ 109

Query: 206 FILQK 220
           F L K
Sbjct: 110 FTLTK 114



 Score = 46.0 bits (104), Expect = 9e-06
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = +2

Query: 206 FILQKVLWDSVALERVDTACDPXXXXXXXXXXMQEGLAHVCLI 334
           F+L + LWD +AL+ +  ACDP          MQEGLAH+ LI
Sbjct: 172 FLLLQELWDWLALDTIQQACDPTASADLAVILMQEGLAHLFLI 214


>12_02_0718 +
           22491241-22491897,22491989-22492126,22493017-22493142,
           22493389-22493493,22493650-22494046,22494144-22494273,
           22494358-22494652,22494736-22495005
          Length = 705

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
 Frame = +2

Query: 128 KGRNIVENQYVKMGAYHTLDLELNRKFILQKVLWDSVALERVD-TAC---DPXXXXXXXX 295
           K   +V   + +  A H   L + R+  L ++L    ALER+D +AC   D         
Sbjct: 41  KACRLVSRAFARAEAAHRRALRVLRREPLARLLRAFRALERLDLSACASLDDASLAAALS 100

Query: 296 XXMQEGLAHVCLITPSNDTWSGL 364
                G+  VCL   S   W GL
Sbjct: 101 GADLAGVRRVCLARASGVGWRGL 123


>08_02_1416 - 26915306-26915459,26915553-26915668,26915798-26915910,
            26915995-26916130,26916219-26916338,26916472-26916648,
            26916790-26916862,26916948-26917083,26917179-26918055,
            26918138-26918331,26918438-26918620,26918730-26918796,
            26918900-26919092,26919317-26919363,26919478-26919574,
            26919663-26919790,26919905-26920009,26920763-26920879
          Length = 1010

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 183  NVWYAPIFTY*FSTILRPFNRNTHACVSKS 94
            NV+ +P+ T    T+L P +++ +ACV +S
Sbjct: 911  NVYVSPLRTSKMDTLLSPSSKSYYACVGES 940


>04_04_1669 - 35222817-35223434,35223530-35223715,35223960-35224106
          Length = 316

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +2

Query: 98  FDTQACVLRLKGRNIVENQYVKMGAYHTLDL----ELNRKFILQKVLWDSVALERVDTAC 265
           FD    +   K RN+ +   V +   HT+ L      N +F   K + D V ++++   C
Sbjct: 143 FDVPTLIQAFKDRNLDKTDLVALSGAHTIGLGHCGSFNDRFDGSKPIMDPVLVKKLQAKC 202


>04_04_1423 - 33455818-33457076,33457165-33457201
          Length = 431

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 139 IATFQSQYTCLRVKINIFYSNSERSPHSIAGGGTS 35
           + T  + Y C ++ I ++YS+S      IA GG S
Sbjct: 23  VVTIVAIYKCAKIAIKMWYSSSRDHHTPIANGGGS 57


>08_02_0107 +
           12494650-12495270,12507463-12508146,12508325-12508472,
           12508493-12508584,12508713-12509426
          Length = 752

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 173 MLPSLHTDFLQYCDLS 126
           +LP  H DFL YCD S
Sbjct: 239 ILPDTHKDFLVYCDAS 254


>09_02_0555 - 10588685-10592038
          Length = 1117

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 173 MLPSLHTDFLQYCDLS 126
           +LP  H DF+ YCD S
Sbjct: 468 ILPDTHKDFMVYCDAS 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,121,357
Number of Sequences: 37544
Number of extensions: 142730
Number of successful extensions: 298
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)