Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_J18
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 140 2e-34
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 27 1.3
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 2.3
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.4
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 25 7.1
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 7.1
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 25 9.4
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 9.4
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 140 bits (338), Expect = 2e-34
Identities = 71/143 (49%), Positives = 95/143 (66%), Gaps = 4/143 (2%)
Frame = +1
Query: 40 VVLVARCEHDAVMQGPQNETQFLTIKALNEWDSKLAN---GVEWRQKLDTQRGAVLANEL 210
V L+ R E D ++ P N+ Q+++IKALNE+D K N V+WR KL++QRGAV A E+
Sbjct: 392 VKLMVRTEVDGYVKNPANDVQYISIKALNEYDPKFTNVTGSVDWRSKLESQRGAVFATEM 451
Query: 211 RNNSCKLAKWTVQALLAGSDQIKFGYVSRSQVRDNSRHVILGTQQFKPHEFASQINLSMG 390
+NNSCKLA+WTV+ALLAG D +K G+VSRS RD H ILG +KP + ASQ+NLS+
Sbjct: 452 KNNSCKLARWTVEALLAGVDSMKVGFVSRSNARDAQHHGILGVVAYKPADLASQMNLSLS 511
Query: 391 PSVG-HPALFDRLLLETEGRKVL 456
G + D L +G+ VL
Sbjct: 512 NGWGIVRTIADVCLKMPDGKYVL 534
Score = 64.5 bits (150), Expect = 9e-12
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = +2
Query: 398 WAILPCLIDFCLKQKDGKYLIMKDPNKPLIRLYDIPDNTFESDA 529
W I+ + D CLK DGKY+++KDPN+P++RLY +P NTFE A
Sbjct: 514 WGIVRTIADVCLKMPDGKYVLVKDPNRPILRLYSVPPNTFEEAA 557
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 227 LQELFLSS-LASTAPRCVSSFWRHSTPFASFESHSLSALIVRNWVSF 90
LQ+ FL + A C++S+W S PF S LS +VR +V F
Sbjct: 27 LQQRFLRACFALLCLCCITSYWFSSGPFISLSFWFLS--LVRGFVCF 71
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 386 WDQAWAILPCLIDFCLKQKDGKYLIMKDPNK 478
+D+A PC++D +QK + +I+ D ++
Sbjct: 484 FDEAQDFTPCMVDLIYRQKHARIVIVGDAHQ 514
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 4.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 214 NNSCKLAKWTVQALLAGSDQIKFGYVSRSQVRDNSRHVILGTQQFKPHEFASQINLSM-G 390
NNS +Q +DQ KF V +++ N V+ T P F Q++L+
Sbjct: 663 NNSILQMHQNLQNSSNTNDQYKFDSVQENELHANITPVLDQTMSMFP--FKDQLDLNFAA 720
Query: 391 PSVGHPALFDRLLLE 435
+V +P +FD + L+
Sbjct: 721 ANVYNPNVFDDMGLD 735
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.4
Identities = 25/81 (30%), Positives = 43/81 (53%)
Frame = -2
Query: 269 SDPASRA*TVHLASLQELFLSSLASTAPRCVSSFWRHSTPFASFESHSLSALIVRNWVSF 90
S PAS + H +SL SS + ++ VSS + H++ + SHS S+ + + S
Sbjct: 391 SRPASSS--SHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHS-SSHSLSSLSS- 446
Query: 89 *GPCITASCSHLATNTTPLFK 27
P +TAS S L T+++ ++
Sbjct: 447 -KPILTASSSSLLTSSSHTYE 466
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/26 (26%), Positives = 17/26 (65%)
Frame = +1
Query: 154 VEWRQKLDTQRGAVLANELRNNSCKL 231
++W+ +L Q GA+ N ++ ++ +L
Sbjct: 87 IDWQTRLQKQDGAITGNAIKKSAAEL 112
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 231 ELAGVVPQLVGQHGAALRVQFLAPLDTVRQLRV 133
E GV+ +LVG+ Q+L+PLD +R+ ++
Sbjct: 467 EALGVLMKLVGERAIN---QYLSPLDDIRKSKI 496
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +1
Query: 7 GRYRKWNLNNGVVLVARCEHDAVMQG 84
G+ + W++N+G +V +H + + G
Sbjct: 361 GKIKVWDMNSGFCIVTFTQHTSAVSG 386
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 133 DSKLANGVEWRQKLDTQRGAVLANELRNNSCKLAKWTVQALLAGSDQIKF 282
D ++ +W +LDTQ + NE NN+ L ++V +D ++
Sbjct: 3 DDSFSSDEDW-DELDTQVVDKIENEYHNNTIGLNGYSVDEYFDANDSNRY 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,886
Number of Sequences: 5004
Number of extensions: 32286
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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