Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_J18
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0140 - 27982037-27983794 155 2e-38
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 31 0.58
01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731 30 1.0
09_06_0105 + 20896203-20896424,20896502-20896714,20896798-208969... 29 1.8
12_02_0147 + 14403046-14403285,14403371-14404078,14404145-14404702 29 2.4
03_01_0108 + 857303-857372,857690-857730,857751-857783,857901-85... 29 3.1
02_04_0461 - 23125260-23125868 29 3.1
04_04_0444 + 25270620-25273001 28 5.4
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538... 27 7.2
12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403 27 9.5
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 27 9.5
>05_07_0140 - 27982037-27983794
Length = 585
Score = 155 bits (376), Expect = 2e-38
Identities = 79/150 (52%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Frame = +1
Query: 10 RYRKWNLNNGVVLVARCEHDAVMQGPQNETQFLTIKALNEWDSKLANGVEWRQKLDTQRG 189
RYR+W L++ + +VARCE AV P QFLT+ ALNE+D K+ GV+WRQKL+TQRG
Sbjct: 361 RYRRWKLDDEISIVARCEVHAVNADPGGGRQFLTLNALNEFDPKIT-GVDWRQKLETQRG 419
Query: 190 AVLANELRNNSCKLAKWTVQALLAGSDQIKFGYVSRSQVRDNSRHVILGTQQFKPHEFAS 369
AVLA EL+NN+ KLA+WT QALLAG+D +K GYVSR RD+ H IL +KP +FA+
Sbjct: 420 AVLATELKNNANKLARWTCQALLAGADMMKLGYVSRVHPRDHYNHAILTVMGYKPRDFAT 479
Query: 370 QINLSMGPSVG-HPALFDRLLLETEGRKVL 456
QINL+ G ++ D + EG+ VL
Sbjct: 480 QINLNTSNMWGIVKSIVDICMKFEEGKYVL 509
Score = 59.3 bits (137), Expect = 2e-09
Identities = 19/43 (44%), Positives = 34/43 (79%)
Frame = +2
Query: 398 WAILPCLIDFCLKQKDGKYLIMKDPNKPLIRLYDIPDNTFESD 526
W I+ ++D C+K ++GKY+++KDP KP +R+Y++P + FE+D
Sbjct: 489 WGIVKSIVDICMKFEEGKYVLVKDPAKPQVRIYEVPSDAFEND 531
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 31.1 bits (67), Expect = 0.58
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +1
Query: 160 WRQKLDTQRGAVLANELRNNS-CKLAKWT----VQALLAGSDQIKFGYVSRSQVRDNSRH 324
WR + D Q A LA + + C WT V A+L I ++SRSQ+++ +H
Sbjct: 630 WR-RADRQGAATLAVVVASGLICGEGLWTLPSAVLAMLKVQPPICMKFLSRSQIQEVRQH 688
Query: 325 VILGTQQFKP 354
+LG +P
Sbjct: 689 FVLGAADIQP 698
>01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731
Length = 369
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 15 PEMELEQRCCVGGQVRTRRSNAGPSERDPVPDD 113
P+ CC GG R R + GP D +PDD
Sbjct: 13 PQYATAGDCCGGGGRRKRLAGGGPDYLDELPDD 45
>09_06_0105 +
20896203-20896424,20896502-20896714,20896798-20896953,
20897034-20897990
Length = 515
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 78 AGPSERDPVPDDQGAQRMGLEAGERCRVAPE 170
AGP E++P+ D+ +R L A ER P+
Sbjct: 418 AGPVEKEPINDENSGRRKSLSAEERWPELPD 448
>12_02_0147 + 14403046-14403285,14403371-14404078,14404145-14404702
Length = 501
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 45 VGGQVRTRRSNAGPSERDPVPDDQ-GAQRMGLEAGER 152
+ G+ RRS P ++DP DD+ A GL+ ER
Sbjct: 78 IEGETAPRRSKGQPKKKDPSKDDEVPANTTGLKKSER 114
>03_01_0108 +
857303-857372,857690-857730,857751-857783,857901-857996,
858435-858602,858683-858751,858844-858871,859019-859196,
859390-859570,859748-859824,860449-860560
Length = 350
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 3 TRPLP-EMELEQRCCVGGQVRTRRSNAGPSERDPVPDD 113
+ P P +++L +R G V++R GP P+PDD
Sbjct: 72 SNPEPVKLQLRERAWFGSSVKSRLQYLGPCPGLPIPDD 109
>02_04_0461 - 23125260-23125868
Length = 202
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 54 QVRTRRSNAGPSERDPVPDDQGAQRMGLEAGERCRVA 164
+ RTRR++A + R P P +Q A+ L+ + RVA
Sbjct: 84 EARTRRASALAASRKPTPLEQRARDKSLKRAYQARVA 120
>04_04_0444 + 25270620-25273001
Length = 793
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 151 GVEWRQKLDTQRGAVLANELRNNSCKLAKWTVQA 252
G W+ + V++N NNS A W+ QA
Sbjct: 92 GASWQLAISGDGNLVISNRANNNSMTAAAWSSQA 125
>08_01_0612 +
5378190-5378251,5378926-5379244,5379381-5379671,
5380520-5380768,5380843-5380967,5381487-5381585,
5381668-5382352
Length = 609
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 34 NGVVLVARCEHDAVMQGPQ-NETQFLTIKALNEWDSKLANGVEWRQKLDTQRGAVLANEL 210
N V V R MQG + N+T + TI ++ +S N V W ++++ RG +
Sbjct: 436 NNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEA-RGYPADKKA 494
Query: 211 RNNSCKLAK 237
+N LAK
Sbjct: 495 KNILLSLAK 503
>12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403
Length = 505
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 48 GGQVRTRRSNAGPSERDPVPDDQGAQRMGLEAG 146
GGQVRTRRS E D +++ A+ E G
Sbjct: 57 GGQVRTRRSAKAAVESDGEEEEEDAEAGSEEDG 89
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 319 ASCRAPATSTRSRTLSDPIQPVEPERST 236
AS ATST SR + PV+P+RS+
Sbjct: 303 ASSSVSATSTASRGAAPACYPVDPQRSS 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,208,493
Number of Sequences: 37544
Number of extensions: 238586
Number of successful extensions: 848
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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