Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J18
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical pr...   161   3e-40
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical
           protein R08D7.3 protein.
          Length = 570

 Score =  161 bits (391), Expect = 3e-40
 Identities = 80/131 (61%), Positives = 93/131 (70%), Gaps = 5/131 (3%)
 Frame = +1

Query: 10  RYRKWNLNNGV-----VLVARCEHDAVMQGPQNETQFLTIKALNEWDSKLANGVEWRQKL 174
           +YRKWNL NGV      LV R E D V+ G  NETQ LTIKA NEWDS  + GV+WR KL
Sbjct: 381 KYRKWNLGNGVDGKPVELVCRTELDGVIHGLGNETQTLTIKAFNEWDSTQSGGVDWRTKL 440

Query: 175 DTQRGAVLANELRNNSCKLAKWTVQALLAGSDQIKFGYVSRSQVRDNSRHVILGTQQFKP 354
           D Q+GAV+A E++NNS K+AKWT+QALLAGSD +K GYVSR+  R    H IL TQ  KP
Sbjct: 441 DVQKGAVMATEIKNNSAKVAKWTLQALLAGSDTMKLGYVSRNNARSTQNHSILLTQYVKP 500

Query: 355 HEFASQINLSM 387
            EFAS I L+M
Sbjct: 501 TEFASNIALNM 511



 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 29/46 (63%), Positives = 36/46 (78%)
 Frame = +2

Query: 389 DQAWAILPCLIDFCLKQKDGKYLIMKDPNKPLIRLYDIPDNTFESD 526
           D  W IL C+ID C+KQK GKYL+MKDP  P+IRLY +P+ TFES+
Sbjct: 512 DNCWGILRCVIDSCMKQKPGKYLLMKDPQSPVIRLYSLPEGTFESE 557


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 486 ISGLFGSFIIKYFPSFCFKQKSI 418
           IS ++G+FI+ Y P  CF  K++
Sbjct: 156 ISAIYGTFILFYTPIICFNSKAL 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,681,237
Number of Sequences: 27780
Number of extensions: 186924
Number of successful extensions: 691
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)