Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J16
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   128   3e-31
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   126   2e-30
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   0.86 
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   2.0  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    27   2.0  
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    26   3.5  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   4.6  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   6.1  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   6.1  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   6.1  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   8.0  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   8.0  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  128 bits (310), Expect = 3e-31
 Identities = 64/105 (60%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
 Frame = +1

Query: 175 SRINRPPISLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARA 348
           S+ NRPPIS+S++A     K  + EG   V+VGTV++D RL TVPK++VAAL  T+ ARA
Sbjct: 54  SKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARA 113

Query: 349 RILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAP 483
           RIL AGGE+LT DQLALRAPTG  TVL++G+++AREA RHFG  P
Sbjct: 114 RILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFGP 158


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  126 bits (303), Expect = 2e-30
 Identities = 62/105 (59%), Positives = 80/105 (76%), Gaps = 2/105 (1%)
 Frame = +1

Query: 175 SRINRPPISLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARA 348
           S+ NRPPIS+S++A     K  + +    VVVGTV++D R+ TVPK+++AAL  T+ ARA
Sbjct: 54  SKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARA 113

Query: 349 RILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAP 483
           RIL AGGE+LT DQLALRAPTG  TVLV+G+++AREA RHFG  P
Sbjct: 114 RILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFGP 158


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 186 PTSDFFVPFGTPHEEAYTRGFDRCSR 263
           P +D F+PF TP  +AY +   R  R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 247 LIAVVVGTVSNDVRLY-TVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKT 423
           L+ +VV  ++NDVRL+  V +  +   H  E   A  L A   +++   +     T  KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752

Query: 424 VLVQGRRNAREAVRHFGPAPG 486
             V+G     EA  + G  PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 136 QVQPDHPTEICLLSRINRP 192
           Q QP H T + L+  INRP
Sbjct: 398 QPQPTHTTNVALVEEINRP 416


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 156 RMIWLNLAFVRLAKYLYSFTN 94
           ++I  N  F  LAKYLYSFT+
Sbjct: 106 QVIEANGEFPELAKYLYSFTD 126


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 190 PPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 369
           PP+  S L   +   T + L   ++  + +  R+ T+PK+  + L  +  +R  +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 385 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPA 480
           D++  + P G K  + Q ++  R A++H+  A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 412 GRKTVLVQGRRNAREAVRHFGPAPG 486
           G    L Q RR     V HFG APG
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPG 868


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 70   LNFGAPNFPVVFMIDVDTHLD 8
            LN+ + + PV+  I +D+HLD
Sbjct: 1170 LNWDSVDVPVIIKISLDSHLD 1190


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 119 PSICTVLPIVSSTHPET*LRCAELSCRVYD 30
           P +CTVLPI+   +    +    + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 280 DVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNARE 456
           D  L  VP +      VT   R  +   GG      +   R+ T R+T+L  G RN+R+
Sbjct: 61  DANLSNVPTINSIPSPVT---RPPVAVGGGIFYGARRTRNRSQTQRRTLLENGFRNSRK 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,634
Number of Sequences: 5004
Number of extensions: 38214
Number of successful extensions: 102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)