Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_J16
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 137 5e-33
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 134 5e-32
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 120 6e-28
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 28 4.6
01_01_0512 + 3735005-3735580 28 4.6
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 8.0
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 137 bits (331), Expect = 5e-33
Identities = 70/111 (63%), Positives = 85/111 (76%), Gaps = 6/111 (5%)
Frame = +1
Query: 172 LSRINRPPISLSRLARHM--KKPTREGL----IAVVVGTVSNDVRLYTVPKMTVAALHVT 333
+S+ NRPP+S+ RL R M K P R + IAV+VGTV++D R+Y VP M VAAL T
Sbjct: 54 MSKTNRPPLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFT 113
Query: 334 EKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPG 486
E ARARI+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG
Sbjct: 114 ETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPG 164
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 14 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 163
MGID + ++K +RT +S+DV T + FN +IL+R
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKR 51
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 134 bits (323), Expect = 5e-32
Identities = 67/105 (63%), Positives = 81/105 (77%)
Frame = +1
Query: 172 LSRINRPPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARAR 351
+S+ NRPP+SL RLA+ M+ E IAV+VGTV++D R+ +PKM V AL TE ARAR
Sbjct: 54 MSKTNRPPLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARAR 112
Query: 352 ILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPG 486
I+ AGGE LTFDQLALRAP G TVL++G +NAREAVRHFG APG
Sbjct: 113 IVNAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPG 157
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 14 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 163
MGID + ++K +RT +S DV T + FN +IL+R
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKR 51
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 120 bits (289), Expect = 6e-28
Identities = 68/122 (55%), Positives = 83/122 (68%), Gaps = 17/122 (13%)
Frame = +1
Query: 172 LSRINRPPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARAR 351
+S+ NRPP+SL RL R M+ +E IAV+VGTV++D R+Y VP M VAAL TE ARAR
Sbjct: 54 MSKTNRPPLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARAR 111
Query: 352 ILAAGGEILTFDQLALRAPTGRKT-----------------VLVQGRRNAREAVRHFGPA 480
I+ GGE LTFDQLALRAP G+ T VL++G +NAREAV+HFGPA
Sbjct: 112 IVNTGGECLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPA 171
Query: 481 PG 486
PG
Sbjct: 172 PG 173
Score = 30.3 bits (65), Expect = 0.86
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 14 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 163
MGID + ++K +RT KS DV T + FN +ILRR
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRR 51
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 275 ETVPTTTAIKPSRVGFFMWR-AKRDKEIGGRLIRLNKQISVG 153
E P TTA KP RV F + + K D+E+ G L L + G
Sbjct: 673 EINPNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAREAG 714
>01_01_0512 + 3735005-3735580
Length = 191
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 141 STRSSYGDLFIEPYQPTSDFFVPF--GTPHEEAYTRGFDRCSR 263
S R + ++ Y+PTSD F G P A GF+RC R
Sbjct: 141 SGRDGWTPQWVRVYEPTSDTPSTFYYGDPLPNAVWYGFNRCPR 183
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 259 VVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLAL 399
++G++ DV ++ + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,160
Number of Sequences: 37544
Number of extensions: 278515
Number of successful extensions: 771
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -