Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J16
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   140   5e-34
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    28   3.1  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  140 bits (339), Expect = 5e-34
 Identities = 67/105 (63%), Positives = 84/105 (80%)
 Frame = +1

Query: 172 LSRINRPPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARAR 351
           +SR NR P+SL++LAR ++K   E    V + TV++D RLYTVPK++VAALHVTE ARAR
Sbjct: 53  MSRRNRQPLSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARAR 112

Query: 352 ILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPG 486
           ILAAGGEI+T DQLAL++P G  TV +QG R+AREA +HFGPAPG
Sbjct: 113 ILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPG 157



 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 23/50 (46%), Positives = 27/50 (54%)
 Frame = +2

Query: 14  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRR 163
           MGIDINHKHDR  RRT  KS++                T  KFN I+L+R
Sbjct: 1   MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKR 50


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = -2

Query: 329 TCSAATVILGTV*SLTSLETVPTTTAIKPSRVGFFMWRAKRDKEIGGRLIRLNK 168
           T S +TV +G+  + TS  ++ TT+A KPS    FM+   + KEI    I   K
Sbjct: 615 TSSGSTVTVGSTEASTSGSSLATTSAPKPSVTCLFMYDT-QSKEIDQTAINTYK 667


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = -2

Query: 329 TCSAATVILGTV*SLTSLETVPTTTAIKPSRVGFFMWRAKRDKEIGGRLIRLNK 168
           T S +TV +G+  + TS  ++ TT+A KPS    FM+   + KEI    I   K
Sbjct: 822 TSSGSTVTVGSTEASTSGSSLATTSAPKPSVTCLFMYDT-QSKEIDQTAINTYK 874


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 342  SFLSNV*CGYCHFRNSVKPHIIGDCANDYSDQTLAC-RLLHVACQTGQRNRRSVDTA 175
            S+L+N   G+C   NSV P       +D S Q  AC +   V+C  G   R    +A
Sbjct: 933  SYLANAFQGFCCTANSVCPDNADYLIDDQSQQPRACTQGTFVSCPNGYACRSLTSSA 989


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,202,275
Number of Sequences: 27780
Number of extensions: 224511
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)