Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J15
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    29   1.3  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    29   1.3  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    29   1.3  
Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF022971-11|AAZ32813.1|  265|Caenorhabditis elegans Hypothetical...    27   9.3  

>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 133 LFCFV-KLEKFTNFGALFLS 189
           LFC+V KL KFTNF   F+S
Sbjct: 569 LFCYVPKLNKFTNFAVAFMS 588


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 133 LFCFV-KLEKFTNFGALFLS 189
           LFC+V KL KFTNF   F+S
Sbjct: 547 LFCYVPKLNKFTNFAVAFMS 566


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 133 LFCFV-KLEKFTNFGALFLS 189
           LFC+V KL KFTNF   F+S
Sbjct: 569 LFCYVPKLNKFTNFAVAFMS 588


>Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical
           protein T15D6.9 protein.
          Length = 407

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 150 IREIHKFWGSVFILSCVVVPIFLFYISKS 236
           ++ IH +W   F + C+V  IFLF+  K+
Sbjct: 1   MKSIHPYW---FKICCLVFIIFLFFFQKA 26


>AF022971-11|AAZ32813.1|  265|Caenorhabditis elegans Hypothetical
           protein C31B8.16 protein.
          Length = 265

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 188 LVVCSCANFFILYFEITRKIHFMKKEVH 271
           L++  C  + ++Y+E+ R+  +M KE++
Sbjct: 154 LLIAICILYVLIYYELQRQEMYMAKEIY 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,037,828
Number of Sequences: 27780
Number of extensions: 168053
Number of successful extensions: 372
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)