Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J12
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical pr...    39   0.002
Z70307-2|CAA94335.1|  208|Caenorhabditis elegans Hypothetical pr...    38   0.004
Z70308-6|CAA94344.1|  207|Caenorhabditis elegans Hypothetical pr...    36   0.021
Z70308-2|CAA94349.1|  212|Caenorhabditis elegans Hypothetical pr...    35   0.028
Z70307-4|CAA94330.1|  209|Caenorhabditis elegans Hypothetical pr...    34   0.064
Z70308-3|CAA94350.1|  207|Caenorhabditis elegans Hypothetical pr...    32   0.20 
AC006655-2|AAF39876.1|  208|Caenorhabditis elegans Hypothetical ...    32   0.20 
AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical ...    30   0.79 
Z73896-3|CAA98060.1|  208|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AC024791-3|AAF60673.1|  468|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z70308-5|CAA94348.1|  207|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68135-2|CAA92228.2|  194|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   9.8  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   9.8  
AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.5 protein.
          Length = 209

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
 Frame = +1

Query: 55  VRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATE 222
           ++  L+LA+V C+G  H++   +   KQ    VN HN  R  +AKG+     +   +AT 
Sbjct: 1   MQTALVLALV-CVG-AHAQ--FSEGGKQ--SMVNAHNAVRSSIAKGEYVAKGTKKDSATN 54

Query: 223 MKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW-YSTT 366
           M  M WD  L              H+PDK+        GENL+W YS++
Sbjct: 55  MLKMKWDNSLAQSAQNYANGCPMQHSPDKSY-------GENLFWAYSSS 96


>Z70307-2|CAA94335.1|  208|Caenorhabditis elegans Hypothetical
           protein C39E9.2 protein.
          Length = 208

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
 Frame = +1

Query: 151 VNGHNYRRQLLAKGQV----SGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 318
           +N HN  R  +AKG      +  PAA++M  M WD  +             + N   T  
Sbjct: 28  LNVHNTLRSRIAKGTYVAKGTAKPAASDMLKMKWDATVAASAQA-------YANKCPTGH 80

Query: 319 SGRFQTGENLYWY--STTDSNI 378
           SG    GENLYWY  S T +NI
Sbjct: 81  SGAAGLGENLYWYWTSATITNI 102


>Z70308-6|CAA94344.1|  207|Caenorhabditis elegans Hypothetical
           protein F49E11.10 protein.
          Length = 207

 Score = 35.5 bits (78), Expect = 0.021
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = +1

Query: 151 VNGHNYRRQLLAKGQV----SGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 318
           +N HN  R  +AKG      +     T +  M WD  +           +N+ N   T  
Sbjct: 27  INAHNTLRSKIAKGTYVAKGTQKSPGTNLLKMKWDSAVAASA-------QNYANGCPTGH 79

Query: 319 SGRFQTGENLYWYSTTDS 372
           SG    GENLYWY T+ S
Sbjct: 80  SGDAGLGENLYWYWTSGS 97


>Z70308-2|CAA94349.1|  212|Caenorhabditis elegans Hypothetical
           protein F49E11.5 protein.
          Length = 212

 Score = 35.1 bits (77), Expect = 0.028
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +1

Query: 160 HNYRRQLLAKGQ-VSGH---PAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGSGR 327
           HNY R  +A G+ V+G+   P+A+ M  ++WD  L              H+      + R
Sbjct: 34  HNYLRSQIALGKYVAGNSTKPSASNMMKLIWDTTLETTAQDYSTGCPTGHS------ASR 87

Query: 328 FQTGENLYWYST 363
              GEN+YW+++
Sbjct: 88  ANIGENMYWWTS 99


>Z70307-4|CAA94330.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.4 protein.
          Length = 209

 Score = 33.9 bits (74), Expect = 0.064
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +1

Query: 151 VNGHNYRRQLLAKG--QVSG--HPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 318
           V+ HN  R  LA G   ++G   PA + ++ M WD  L           + + N   T  
Sbjct: 29  VDLHNSFRSKLATGTYSINGTLKPAGSNIRKMSWDSTLATSA-------QTYANTCPTGF 81

Query: 319 SGRFQTGENLYWYSTTDSNI 378
           S    TGENLYW  TT +NI
Sbjct: 82  SNTQGTGENLYW-RTTSANI 100


>Z70308-3|CAA94350.1|  207|Caenorhabditis elegans Hypothetical
           protein F49E11.6 protein.
          Length = 207

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
 Frame = +1

Query: 70  ILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATEMKYMV 237
           +L +V CI  V S+     S  Q +  V+ HN  R  +AKG      +   + + M+ + 
Sbjct: 4   LLLLVCCIAGVFSQFT---STGQ-QAIVDAHNKLRSSIAKGTYVAKGTTQKSGSNMRKIK 59

Query: 238 WDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWY--STTDSNIQT 384
           WD  +           +N+ N   T  S     GENLYWY  S T  N+ T
Sbjct: 60  WDATVATSA-------QNYANTCPTGHSQGSGYGENLYWYWTSGTIGNLDT 103


>AC006655-2|AAF39876.1|  208|Caenorhabditis elegans Hypothetical
           protein H10D18.4 protein.
          Length = 208

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
 Frame = +1

Query: 73  LAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATEMKYMVW 240
           +   +C+  +   +    S       V+ HN  R  +A+G      +  P+A+ M+ +VW
Sbjct: 1   MKFALCLLAIFGCATAQFSSTAQGQIVDAHNKLRSAIAQGSYVAAGTQEPSASNMRKIVW 60

Query: 241 DEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW 354
           DE +         Q      PD   G+     GENLYW
Sbjct: 61  DETV-----AAAAQEYAEGCPDDHSGT---SYGENLYW 90


>AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical
           protein F02E11.5 protein.
          Length = 207

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
 Frame = +1

Query: 55  VRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKG-----QVSGHPAAT 219
           +RAL++LA+V  +  V+ +     S    K  V+ HN  R  +AKG     +    P + 
Sbjct: 1   MRALILLAVVASVS-VYGQ----FSKAGQKAIVDAHNTLRSSIAKGTYVANKTRKEPGSN 55

Query: 220 EMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW 354
            +K M WD  +             + N   T G G+ + GENLYW
Sbjct: 56  ILK-MKWDPTIAKSAQA-------YANTCPT-GHGKSKYGENLYW 91


>Z73896-3|CAA98060.1|  208|Caenorhabditis elegans Hypothetical
           protein F09E8.5 protein.
          Length = 208

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +1

Query: 151 VNGHNYRRQLLAKGQVSGHP----AATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 318
           +N HN  R  +AKG          AA++M  M W   L          ++ + N   T  
Sbjct: 28  LNVHNTLRSRIAKGTYVARGTVKHAASDMLKMKWLRSLATS-------SQIYANRCPTGH 80

Query: 319 SGRFQTGENLYWYSTT 366
           S     GENLYWY T+
Sbjct: 81  SNMIGVGENLYWYWTS 96


>Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.1 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 200 DT*PLASNCLL*LCPLTKSLICLHDKFSRDLL 105
           D   LA NC+     ++K +IC+H   S DL+
Sbjct: 217 DAFQLAFNCMPLCAVVSKKIICMHGGISEDLI 248


>AC024791-3|AAF60673.1|  468|Caenorhabditis elegans Hypothetical
           protein Y47G6A.13 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 467 RKSPLVSREHICNLYIH*TNSP*RCPHSVCMLLSVVEYQYKFSPVWNLPDPKVLSGLWK 291
           R+ PL      C++ +H      RC   V M+ S+V Y     P  NL D K +  + K
Sbjct: 192 RRIPLRGTIRYCSMNVHERKEQGRCDDLVAMIYSIV-YLTLGLPWSNLKDEKEIMSMKK 249


>Z70308-5|CAA94348.1|  207|Caenorhabditis elegans Hypothetical
           protein F49E11.9 protein.
          Length = 207

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
 Frame = +1

Query: 151 VNGHNYRRQLLAKGQV----SGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 318
           V+ HN  R  +AK       +    AT+M+ MV D  +           +N+ N   T  
Sbjct: 25  VDAHNKLRSAIAKSTYVAKGTKKEPATDMRKMVVDSTVAASA-------QNYANTCPTGH 77

Query: 319 SGRFQTGENLYWYSTTDSNIQTECGQRYGEL 411
           S     GENLYW S T +++ +     YGE+
Sbjct: 78  SKGTGYGENLYW-SWTSADVGSL--DSYGEI 105


>Z68135-2|CAA92228.2|  194|Caenorhabditis elegans Hypothetical
           protein ZK1073.2 protein.
          Length = 194

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 391 HIQFVCCYRSLNTNTNFHQSGIFPI 317
           H Q+ CC++ L++NT      +F I
Sbjct: 28  HAQYACCFQQLHSNTGAILIAVFHI 52


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 311  LWDREDSRLVKICIGIQRPIATYKLNVDNAMES 409
            +WD  D +L  +CI +   I  + L  D  M S
Sbjct: 3921 VWDDADGKLSPLCIAMNSLIVVHALRPDRLMAS 3953


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 311  LWDREDSRLVKICIGIQRPIATYKLNVDNAMES 409
            +WD  D +L  +CI +   I  + L  D  M S
Sbjct: 3921 VWDDADGKLSPLCIAMNSLIVVHALRPDRLMAS 3953


>AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical
           protein C08F1.5b protein.
          Length = 905

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 154 NGHNYRRQLLAKGQVSGHPAATEMKYMVWD 243
           NGHNY++  + K + +G    TE  ++ WD
Sbjct: 587 NGHNYKQAAMLKFEKAGGQGITE--FIKWD 614


>AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical
           protein C08F1.5a protein.
          Length = 828

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 154 NGHNYRRQLLAKGQVSGHPAATEMKYMVWD 243
           NGHNY++  + K + +G    TE  ++ WD
Sbjct: 510 NGHNYKQAAMLKFEKAGGQGITE--FIKWD 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,211,889
Number of Sequences: 27780
Number of extensions: 231007
Number of successful extensions: 566
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)