Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J10
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    27   1.2  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    26   3.8  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   6.7  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   6.7  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   6.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   8.8  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    25   8.8  

>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 222 PLPGSKTCRQVPIGVFR*HYFRTSTS-RLSEFTILDHIIIK-QQPRFWSKHSLYIVKKP 392
           PLPGS   + +  G F  H  +T T  +   FT       + Q  +F+  +S Y++K P
Sbjct: 50  PLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFYELYSDYVLKNP 108


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -2

Query: 359 PKSWLLFNDDVVQDGKLT*PRSTGSKVMLPEHTYWYLATG 240
           P   + F    + + +   P S   K  LPE  +W L TG
Sbjct: 96  PNEGIRFRGYTIPECQKLLPSSPNGKQPLPESLFWLLVTG 135


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 285 RTSTSRLSEFTILDHIIIKQQPRFWSKHSLYIVKKPI 395
           RTS+    E TI + +I +++     KH +YI + PI
Sbjct: 876 RTSSGIQEEDTIPNEMIDEERMLDLEKHFMYITESPI 912


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 172 FYHRKLRLILELYMWVRTHVHRRVIRPHYQP--YNHRF 65
           F+HR L    +LY  +  H HR  + P+     YNH F
Sbjct: 147 FWHRYLHYNKKLYNMIHAHHHRLQV-PYAMGALYNHPF 183


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 467 KQIFPVKI-YLLVYINQYHKLQYIRD 393
           KQ+ P++   +L  I+Q  KLQY+RD
Sbjct: 287 KQVVPIQDPRILAKIHQTFKLQYLRD 312


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 376 YRLCFDQNLGCCLMMMWSRMVN 311
           Y + F Q L  CL   W R +N
Sbjct: 515 YTVTFSQQLWYCLARSWERYIN 536


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 65  EAMIVRLVVRPDYASMDVGSNPHVQL 142
           ++ + RL + PD   +    NPHV+L
Sbjct: 40  DSQVNRLCISPDKKFLAAAGNPHVRL 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,533
Number of Sequences: 5004
Number of extensions: 48586
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)