Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J10
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563...    32   0.24 
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903...    32   0.24 
01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191...    29   2.9  

>12_02_0763 +
           22953749-22953884,22955036-22955199,22955695-22956307,
           22968553-22968874,22969107-22969373,22969692-22970460
          Length = 756

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 268 NTPIGTWRQVFEPGS---GSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTH 116
           NTP   WRQVF PGS    SW  +      L HD  YH+ +        W+RTH
Sbjct: 371 NTP--QWRQVFTPGSSVAASWLWQLAKTHVLAHDTGYHQLVS------HWLRTH 416


>12_02_0760 -
           22888636-22889407,22889503-22889769,22890001-22890302,
           22890402-22890512,22890990-22891568,22892026-22892087,
           22892434-22892754,22893434-22893776
          Length = 918

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 268 NTPIGTWRQVFEPGS---GSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTH 116
           NTP   WRQVF PGS    SW  +      L HD  YH+ +        W+RTH
Sbjct: 532 NTP--QWRQVFTPGSSVAASWLWQLAKTHVLAHDTGYHQLVS------HWLRTH 577


>01_06_1397 -
           37017468-37017561,37017763-37017836,37019128-37019193,
           37019543-37019623,37019735-37019943,37020096-37020192,
           37020497-37020514,37020597-37020727,37021040-37021088,
           37021450-37021539,37021616-37021721,37021815-37021885,
           37021963-37022037,37022059-37022120,37022677-37022887,
           37023599-37024069,37024387-37024719
          Length = 745

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 200 GRTAWPATAPRFKNLSPSTNRCVPVALL 283
           G   +P+   R  +LSP++ RC P+A+L
Sbjct: 49  GSLPFPSNEIRISHLSPTSERCPPLAIL 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,124,118
Number of Sequences: 37544
Number of extensions: 306186
Number of successful extensions: 572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)