Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J10
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.3  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 504 IGSLVSDFIDYKQTNLSC*NI-PISIYKSVP 415
           + S   DFID+ Q NL C  +  +S Y   P
Sbjct: 128 LNSESKDFIDFIQKNLQCCGVHSLSDYNDKP 158


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 190 WLPHDIFYHRKLRLILELYMWVRT 119
           W+ HD +    LR++L+ ++ + T
Sbjct: 803 WIAHDRYLPNSLRILLKRFLDITT 826


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 116 RP*TRNPAALPTVQSSLHL 60
           RP  +NP A+P   SSL L
Sbjct: 395 RPFLKNPDAIPAFLSSLFL 413


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 320 PGPHHH 337
           PGPHHH
Sbjct: 412 PGPHHH 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,423
Number of Sequences: 438
Number of extensions: 3518
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)