Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J09
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   3.7  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   4.9  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    25   4.9  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    24   8.6  

>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -3

Query: 269 YKSTNHKRNEIAVDKLRSPSDNISQFM*CENIHLRKQLYVVVNITNRSLLHNITL 105
           YK   +K N   + ++   +D +     C+N+HL  QL+  +N T   L  N  L
Sbjct: 3   YKQLIYKLNHPPLRRIDERNDPLFSNG-CKNVHLEAQLHPRMNATFVMLARNSDL 56


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 179  NIHLR-KQLYVVVNITNRSLLHNITLNSKT 93
            +IH + KQL  +V + N SLL N  +N +T
Sbjct: 1045 SIHKKLKQLLELVGVENASLLPNEVVNKQT 1074


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 284 ACHFTYKSTNHKRNEIAVDKLR 219
           A HF YKS N  RN   ++KL+
Sbjct: 194 AKHFGYKSINVVRNRPDIEKLK 215


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 76  RRCLKQVFEFNVIL 117
           RRC++Q F FNV++
Sbjct: 87  RRCVRQGFNFNVLV 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,398,607
Number of Sequences: 5004
Number of extensions: 25036
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)