Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J09
         (370 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ778112-1|ABH10094.1|  613|Homo sapiens BORIS transcription fac...    28   8.2  
DQ294738-1|ABB92839.1|  613|Homo sapiens BORIS-like protein prot...    28   8.2  

>DQ778112-1|ABH10094.1|  613|Homo sapiens BORIS transcription factor
           transcript variant A3 protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
 Frame = +2

Query: 122 AVTDLLCLRRHTAVYVNVYFRIT*IERYYHSEILI--CLQLFHFAY---DWYFCT*NDKR 286
           A  D   L+RH   +  V+ R   +  Y  +E+    C  +FH  Y          N+KR
Sbjct: 378 ASRDTYKLKRHMRTHSGVHMRN--LHAYSAAELKCRYCSAVFHERYALIQHQKTHKNEKR 435

Query: 287 FRAANCSAAIASD-----ELRTHCGQPVFQIL 367
           F+  +CS A   +      +RTH G+  F  L
Sbjct: 436 FKCKHCSYACKQERHMTAHIRTHTGEKPFTCL 467


>DQ294738-1|ABB92839.1|  613|Homo sapiens BORIS-like protein
           protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
 Frame = +2

Query: 122 AVTDLLCLRRHTAVYVNVYFRIT*IERYYHSEILI--CLQLFHFAY---DWYFCT*NDKR 286
           A  D   L+RH   +  V+ R   +  Y  +E+    C  +FH  Y          N+KR
Sbjct: 378 ASRDTYKLKRHMRTHSGVHMRN--LHAYSAAELKCRYCSAVFHERYALIQHQKTHKNEKR 435

Query: 287 FRAANCSAAIASD-----ELRTHCGQPVFQIL 367
           F+  +CS A   +      +RTH G+  F  L
Sbjct: 436 FKCKHCSYACKQERHMTAHIRTHTGEKPFTCL 467


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,289,665
Number of Sequences: 237096
Number of extensions: 743504
Number of successful extensions: 1154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)