Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J09
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-7|CAE54888.1|  382|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z75529-6|CAA99785.1|  269|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine rece...    26   9.7  
AC006748-3|AAF60513.2|  382|Caenorhabditis elegans Hypothetical ...    26   9.7  

>Z75529-7|CAE54888.1|  382|Caenorhabditis elegans Hypothetical
           protein C44H9.7b protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 39  NVLCLTNYKYCTTSLF 86
           N  CLT Y  CTT++F
Sbjct: 76  NATCLTKYSTCTTAVF 91


>Z75529-6|CAA99785.1|  269|Caenorhabditis elegans Hypothetical
           protein C44H9.7a protein.
          Length = 269

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 39  NVLCLTNYKYCTTSLF 86
           N  CLT Y  CTT++F
Sbjct: 76  NATCLTKYSTCTTAVF 91


>Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical
           protein T25B9.5 protein.
          Length = 541

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = -3

Query: 266 KSTNHKRNEIAVDKLRSPSDNISQFM*CENIHLRKQLYVVVNITNRSLLHNITLNSK 96
           ++++   NE   DKL S + N+S  M   +    ++ Y+  ++ N  + H +   S+
Sbjct: 24  EASDKNPNEAGADKLESGNKNVSTSMMSNSSSDPEEDYIRSHLINLHVYHGVLFGSE 80


>U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 13 protein.
          Length = 345

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 234 SYFISLMIGTFVREMTSVFALQTVVPRSLATNCAHIAANQYFKY 365
           +YFIS+++  +   +   F  Q  VP  + +NC  I     FKY
Sbjct: 62  AYFISILL--YAVMLCFAFGYQFFVPFFIKSNCDLIINKTLFKY 103


>AC006748-3|AAF60513.2|  382|Caenorhabditis elegans Hypothetical
           protein Y39A3B.2 protein.
          Length = 382

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -3

Query: 314 SRHYSLQRENACHFTYKSTNHKRNEIAVDK 225
           +++Y    +N+ H  YK+    R  +++DK
Sbjct: 324 TKYYGNLNKNSAHLMYKALKFSRKALSIDK 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,791,591
Number of Sequences: 27780
Number of extensions: 145478
Number of successful extensions: 359
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)