Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_J09
(370 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 30 0.008
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 30 0.008
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 30 0.008
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 30 0.008
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 30 0.008
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 29 0.013
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 27 0.053
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 22 2.6
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 3.5
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 21 4.6
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.008
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 317 RSRHYSLQRENACHFTYKSTNHK-RNEIAVDKLRSPSDNISQ 195
RSR S QR ++CH Y+ + H+ RN D RS S + S+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.008
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 317 RSRHYSLQRENACHFTYKSTNHK-RNEIAVDKLRSPSDNISQ 195
RSR S QR ++CH Y+ + H+ RN D RS S + S+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.008
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 317 RSRHYSLQRENACHFTYKSTNHK-RNEIAVDKLRSPSDNISQ 195
RSR S QR ++CH Y+ + H+ RN D RS S + S+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 30.3 bits (65), Expect = 0.008
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 317 RSRHYSLQRENACHFTYKSTNHK-RNEIAVDKLRSPSDNISQ 195
RSR S QR ++CH Y+ + H+ RN D RS S + S+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 30.3 bits (65), Expect = 0.008
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 317 RSRHYSLQRENACHFTYKSTNHK-RNEIAVDKLRSPSDNISQ 195
RSR S QR ++CH Y+ + H+ RN D RS S + S+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 29.5 bits (63), Expect = 0.013
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 317 RSRHYSLQRENACHFTYKSTNHK-RNEIAVDKLRSPSDNISQ 195
RSR S QR ++CH Y+ H+ RN D RS S + S+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSR 259
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 27.5 bits (58), Expect = 0.053
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 317 RSRHYSLQRENACHFTYKSTNHK 249
RSR S QR ++CH Y+ + H+
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHE 240
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 21.8 bits (44), Expect = 2.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 314 SRHYSLQRENACHFTYKSTNHKRNEIA 234
+R+ +L+ E HF T +R EIA
Sbjct: 16 TRYQTLELEKEFHFNRYLTRRRRIEIA 42
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.4 bits (43), Expect = 3.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 134 NRSLLHNITLNSKTCFKQRRSAVFI 60
NRS + T+ TC + R +A++I
Sbjct: 335 NRSPVRPATVQYDTCCQGRATAIYI 359
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 4.6
Identities = 15/71 (21%), Positives = 27/71 (38%)
Frame = -3
Query: 323 R*RSRHYSLQRENACHFTYKSTNHKRNEIAVDKLRSPSDNISQFM*CENIHLRKQLYVVV 144
R R R + + Y+ T+ +R+ ++ RS I + + IH
Sbjct: 41 RSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNY 100
Query: 143 NITNRSLLHNI 111
N + L +NI
Sbjct: 101 NNNCKKLYYNI 111
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,068
Number of Sequences: 438
Number of extensions: 1655
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8804355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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