Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J07
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   1.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   1.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   2.0  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    26   2.6  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    25   3.4  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   4.5  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   4.5  
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    25   6.0  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    25   6.0  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    24   7.9  

>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
 Frame = +3

Query: 306 FPYRDVTIK-----RNTDVNECYEMLSEIGRGKFSTVY 404
           F +RD+T++     RN+   E +E  S +GRG F +VY
Sbjct: 149 FRFRDLTLESWLQSRNSRYIEDFEEYSLLGRGGFGSVY 186


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 267 VDETDPVGEIEPPFPYRDVTIKRNTDVNECYEMLSEIGRGKFSTVYL 407
           V E  PV  +E     +D+T K      E +  LS +G+G F  V L
Sbjct: 653 VKEPIPVPSVETSVVAQDLTHKAKRIGLEDFTFLSVLGKGNFGKVML 699


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 255 LTIFDKQIYITNTTYPKSV 199
           L + ++  Y+TNTTYP S+
Sbjct: 425 LRLLEEDRYLTNTTYPTSI 443


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 342 DVNECYEMLSEIGRGKFSTVY 404
           ++ E Y ++ +IG G FS+VY
Sbjct: 63  ELQENYRLIEKIGEGTFSSVY 83


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 357 YEMLSEIGRGKFSTVY 404
           YE++ ++GRGK+S V+
Sbjct: 43  YEIIRKVGRGKYSEVF 58


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 318 DVTIKRNTDVNECYEMLSEIGRGKFSTVYL 407
           +++  + T   + YE++  I +G F TVYL
Sbjct: 551 NISSGKGTPSIQDYEIIKPISKGTFGTVYL 580


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 205 FRIRCICNVNLFVKDRQI*FTLTKPILLERSNHRSRTEMSPSKEIRMSMN 354
           FRI     +N+ VKD  + F   KP+LL+  N           EI++  N
Sbjct: 725 FRIPIQHVLNILVKDGTLNFCFLKPLLLKWMNDYETRIHQNDDEIQVIKN 774


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 249 SSNMIHVDETDPVGEIEPPFPYRDVTIKRNTDVN 350
           S +++ V ETD V + +PP  Y + ++++N   N
Sbjct: 191 SRHVVSVVETDLVVDFDPPIGYEE-SLQKNKQQN 223


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 357 YEMLSEIGRGKFSTVY 404
           Y + SEIGRG F+ VY
Sbjct: 14  YVIRSEIGRGSFAIVY 29


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 270 QRESYLTIFDKQIYITNTTYPKSVFSLKKH--THKRVCTSTVN 148
           +R+  LTI +  +Y+ N     S+ S+  H  TH   C + ++
Sbjct: 15  RRQIILTIINSLVYLVNFISCPSIHSIPFHISTHLTSCQANIS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,097
Number of Sequences: 5004
Number of extensions: 34258
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)