Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J07
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580     33   0.12 
07_03_0588 - 19715677-19715754,19715843-19715942,19716170-197162...    31   0.27 
07_03_0947 - 22805419-22805571,22805736-22805966,22806161-228063...    28   3.3  
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312...    27   5.7  
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526...    27   5.7  
01_06_1074 + 34318685-34319314,34319429-34319546,34319662-343198...    27   5.7  

>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
          Length = 726

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 232 LHYKYNVSEIRVQFKKTHTQKSLHIHCQLALAQNNRFVTHWLE-THNCENKSKQVTLWVY 56
           +HY+  V  +R  F+ T++  +L +   +  +  +  V H L+ + + +  SKQV LW+Y
Sbjct: 39  MHYRLAVDLLRANFRLTNSSVALALRAAIGGSPADLNVQHLLDRSFSFDVFSKQVGLWIY 98


>07_03_0588 -
           19715677-19715754,19715843-19715942,19716170-19716297,
           19716385-19716552,19716623-19716735,19716820-19716972,
           19717082-19717225,19718710-19719427
          Length = 533

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 294 IEPPFPYRDVTI-KRNTDVNECYEMLSEIGRGKFSTVYL 407
           + PP P  D  + K   DV   Y +  E+GRG+F   YL
Sbjct: 63  VAPPKPTPDTILGKPYDDVRSVYSLGKELGRGQFGVTYL 101


>07_03_0947 -
           22805419-22805571,22805736-22805966,22806161-22806328,
           22806425-22806540,22806853-22807005,22807241-22807384,
           22807584-22807707,22808126-22808689
          Length = 550

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 303 PFPYRDVTIKRNT--DVNECYEMLSEIGRGKFSTVYL 407
           P  +R V ++  T  D+   YE+  E+GRG+F   YL
Sbjct: 55  PSGHRLVVLREPTGRDIAARYELGGELGRGEFGVTYL 91


>05_05_0315 -
           24030695-24030787,24030896-24030995,24031120-24031247,
           24031350-24031517,24031626-24031741,24031773-24031896,
           24032085-24032254,24032255-24032999
          Length = 547

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 297 EPPFPYRDVTIKRNTDVNECYEMLSEIGRGKFSTVYL 407
           +PP P   V  +   DV   Y +  E+GRG+F    L
Sbjct: 48  KPPAPIGPVLGRPMEDVKSIYTVGKELGRGQFGVTSL 84


>03_02_0048 -
           5265595-5265783,5265882-5265992,5266259-5266547,
           5266647-5266903,5266995-5267356,5267447-5267522,
           5267618-5267707,5267800-5267891,5267995-5268098,
           5268191-5268253,5268609-5268736
          Length = 586

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = -1

Query: 328 MVTSRYGNGGSISPTGSVSST*IIFDDL*QTNLHY----KYNVSEIRVQFKKTHTQKSLH 161
           +V SRY  G +     S S T   +D + +  L Y    K    +  VQ   TH   +L 
Sbjct: 305 LVKSRYTTGAA-----SRSFTSTAYDPVTKNELEYVKVEKNPKKKGYVQLHTTHGDLNLE 359

Query: 160 IHCQLALAQNNRFVTH 113
           +HC +       F+TH
Sbjct: 360 LHCDITPRTCENFLTH 375


>01_06_1074 +
           34318685-34319314,34319429-34319546,34319662-34319814,
           34319906-34320021,34320135-34320302,34320424-34320551,
           34320645-34320744,34320866-34320958
          Length = 501

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 297 EPPFPYRDVTIKRNTDVNECYEMLSEIGRGKFSTVYL 407
           +PP P   V  +   DV   Y +  E+GRG+F    L
Sbjct: 41  KPPAPIGPVLGRPMEDVRSIYTIGKELGRGQFGVTSL 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,540,484
Number of Sequences: 37544
Number of extensions: 201468
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)