Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J07
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF043706-4|AAU87803.1|  394|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical ...    29   1.7  
U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U00034-3|AAL00850.1|  211|Caenorhabditis elegans Pim (mammalian ...    27   5.2  
U00034-2|AAM15548.1|  378|Caenorhabditis elegans Pim (mammalian ...    27   5.2  
U00034-1|AAA50639.2|  566|Caenorhabditis elegans Pim (mammalian ...    27   5.2  
U97005-11|AAB52288.1|  891|Caenorhabditis elegans Hypothetical p...    27   6.9  
AC006776-5|AAF60625.1|  358|Caenorhabditis elegans Serpentine re...    27   6.9  
U97002-6|AAB52264.2|   83|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    26   9.1  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    26   9.1  
U11280-4|AAM97951.2|  353|Caenorhabditis elegans Protein kinase ...    26   9.1  
AF100305-2|AAC68917.1|  320|Caenorhabditis elegans Hypothetical ...    26   9.1  

>AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical
           protein ZC123.4b protein.
          Length = 536

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 342 DVNECYEMLSEIGRGKFSTVY 404
           DVN+ Y+ + ++G G ++TVY
Sbjct: 211 DVNDLYKRIDKLGEGSYATVY 231


>AF043706-4|AAU87803.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC123.4c protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 342 DVNECYEMLSEIGRGKFSTVY 404
           DVN+ Y+ + ++G G ++TVY
Sbjct: 55  DVNDLYKRIDKLGEGSYATVY 75


>AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC123.4a protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 342 DVNECYEMLSEIGRGKFSTVY 404
           DVN+ Y+ + ++G G ++TVY
Sbjct: 211 DVNDLYKRIDKLGEGSYATVY 231


>U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical
           protein T16A1.8 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 223 KYNVSEIRVQFKKTHTQKSLHIHCQLALAQN-NRFVTHWLETHNCENKS 80
           ++NVS++ +         ++ I  Q+   +N N F+ HW++  NC+ KS
Sbjct: 191 QFNVSKVTLNEIVLVNCSTITIDNQVISDKNLNLFIKHWIKGSNCQLKS 239


>U00034-3|AAL00850.1|  211|Caenorhabditis elegans Pim (mammalian
           oncogene) relatedkinase protein 1, isoform b protein.
          Length = 211

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 357 YEMLSEIGRGKFSTVY 404
           YE+L EIGRG F  VY
Sbjct: 34  YEVLDEIGRGGFGIVY 49


>U00034-2|AAM15548.1|  378|Caenorhabditis elegans Pim (mammalian
           oncogene) relatedkinase protein 1, isoform c protein.
          Length = 378

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 357 YEMLSEIGRGKFSTVY 404
           YE+L EIGRG F  VY
Sbjct: 34  YEVLDEIGRGGFGIVY 49


>U00034-1|AAA50639.2|  566|Caenorhabditis elegans Pim (mammalian
           oncogene) relatedkinase protein 1, isoform a protein.
          Length = 566

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 357 YEMLSEIGRGKFSTVY 404
           YE+L EIGRG F  VY
Sbjct: 34  YEVLDEIGRGGFGIVY 49


>U97005-11|AAB52288.1|  891|Caenorhabditis elegans Hypothetical
           protein F19F10.10 protein.
          Length = 891

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 365 HFITFIDIRISFDGDISVRERWFDLSNRI 279
           H  TF+D R ++  DI   E W ++   +
Sbjct: 375 HLATFLDPRFAYQEDIYPMETWLEIEKEL 403


>AC006776-5|AAF60625.1|  358|Caenorhabditis elegans Serpentine
           receptor, class w protein90 protein.
          Length = 358

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 68  SNLFTFVFAV-VSLQPVSYETVILCEC*LTVDVQTLLCVCFFKLNTDFGYVVFVM*ICLS 244
           ++L+T ++      + ++  TV+LC+   TV+  ++ CV  F ++  +   V+ M  C +
Sbjct: 290 ADLYTAIWLKEAQFRKLAQNTVLLCDSLFTVNA-SIHCVVCFSMSLQYRKAVYNMFSCFN 348

Query: 245 KIVK 256
            I K
Sbjct: 349 CIGK 352


>U97002-6|AAB52264.2|   83|Caenorhabditis elegans Hypothetical
           protein K09H11.5 protein.
          Length = 83

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 282 DRFRQRESYLTIFDKQIYITNTTYPKSVFSLKKHTHK 172
           +RF+ R+S++ I +K + ++ T   K+  S +KH  K
Sbjct: 2   NRFKDRQSWMQIPEKILNLSITEIVKAKISTEKHQVK 38


>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 336 NTDVNECYEMLSEIGRGKFSTVY 404
           N D  + Y+ L EIG G F  VY
Sbjct: 23  NKDPEQRYQDLREIGHGSFGAVY 45


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 336 NTDVNECYEMLSEIGRGKFSTVY 404
           N D  + Y+ L EIG G F  VY
Sbjct: 23  NKDPEQRYQDLREIGHGSFGAVY 45


>U11280-4|AAM97951.2|  353|Caenorhabditis elegans Protein kinase
           protein 18, isoformb protein.
          Length = 353

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 336 NTDVNECYEMLSEIGRGKFSTVY 404
           N D  + Y+ L EIG G F  VY
Sbjct: 23  NKDPEQRYQDLREIGHGSFGAVY 45


>AF100305-2|AAC68917.1|  320|Caenorhabditis elegans Hypothetical
           protein W04B5.5 protein.
          Length = 320

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 357 YEMLSEIGRGKFSTVYL 407
           Y +  E+G G FSTVYL
Sbjct: 26  YSVEKEVGEGSFSTVYL 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,496,053
Number of Sequences: 27780
Number of extensions: 198411
Number of successful extensions: 621
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)